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Hello,
I have some whole-genome sequencing BAM files of T-cell leukaemia. I was wondering how I can modify IgCaller to call T-cell receptor (TCR) rearrangements. Some guidance on how I can modify t…
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In the previous version of DockQ, there were input arguments, -native_chain{1,2} and -model_chain{1,2}, that allow grouping chains for receptor and ligand. For example, if there are one chains (e.g., …
heol1 updated
2 weeks ago
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Langium version: 3.0, 3.1
Package name: langium
## Steps To Reproduce
1. Given the following grammar:
```
grammar HelloWorld
entry Model:
(entities+=Entity | receptors+=Receptor)*;
…
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'TRAM-dependent toll-like receptor 4 signaling pathway' GO:0035669
'TRAM-dependent toll-like receptor signaling pathway' GO:0035668
'TRIF-dependent toll-like receptor 4 signaling pathway' GO:0035667…
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I have run constant pH simulations with Gromacs and Now I want to trace the water molecules at different pH in my trajectory that processed in PDB format with last 1000 frames.
When I run recepto…
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When trying to build an RPM of the receptor, receptorctl, & python3-receptor-python-worker we keep running in to a build error during the testing phase with the error. Not sure if their is a small bug…
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Hello,
The receptor that I am using has a coenzyme (NADPH) which I would like to keep it during docking. If I do not keep it, the small molecule might clash with it. When I prepare the receptor with …
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### Bug summary
Hi everyone,
I am trying to run gmx_MMPBSA on a DNA-aptamer-ligand trajectory obtained in Gromacs using the CHARMM ff. I successfully ran the calculations using the complex trajec…
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### Bug summary
I was calculating MMPBSA using my gromacs result and ended up with error.
### Terminal output
```bash
combine_snap.sh _GMXMMPBSA_COM_FIXED.pdb _GMXMMPBSA_leap.in gmx_mmpbsa.lo…
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Hi Dr. Jin,
I have single cell data from two different organs, A and B, respectively. I intend to find the ligand-receptor interaction pairings between the two organs. Therefore, I have directly me…