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Hi there,
I've gotten markedly different results when phasing using pyrho maps compared to hapmap's lifted over maps. While looking for an explanation, I've noticed that the GRCh38 maps you've rele…
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So far I've been unable to find recombination rates for GRCh38. May need to liftover the previous GRCh37 rates. The GRCh37 rates currently in locuszoom were generated by lifting over GRCh35:
> Thi…
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I've been looking at the new temporary "long" ARG, in which there are samples belonging to 24 Pango X categories, as clsssified by Viridian (chance sampling means these are not quite the same as the 3…
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When importing data, sometimes user labels for samples are not clear and the automated processes for import suggest more samples than really were run during a given instrument session. This is an issu…
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Thank you very much for your excellent tool. You and Li mentioned that in the calculation of PSMC, there are two key parameters, parapattern and maxt, which need to be adjusted according to the actu…
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Dear Sir,
I used 64 CPUs and provided 2TB of memory to run BiG-SCAPE-1.1.5, for clustering 140,000 BGCs. However, I encountered the following error: OSError: [Errno 12] Cannot allocate memory. The c…
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Hi, the ref SNP ID is not shown in the plot, could you please help me with it? Thank you for your time!
![image](https://github.com/user-attachments/assets/d6a9428f-86d5-4a76-a1f4-c9f00287ed9c)
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I'm pretty familiar with JavaScript & Python, trying to learn Lua. But Lua is only displayed alongside Perl & Groovy, neither of which I know. The ability to get a JavaScript, Python, Lua table would …
danja updated
9 years ago
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Hey Kat,
thanks very much for your beautiful plotting functions!
I am using Gubbins and wanted to change the colour of recombination blocks in the plot - perhaps other users might want to do this a…
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parsing edep-sim inputs (root or hdf5 format). Already implemented in https://github.com/DanielMDouglas/GAMPixTools