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Moreover, the cryo-EM map revealed the presence of an additional 13 nucleotides that were not previously annotated as part of the 28S rRNA (Supplementary Fig. 6).
https://doi.org/10.1038/s41467-024…
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Create a rRNA genome for download (--get_genomes)that comprises multiple species and document this in the config file.
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Is there any equivalent to the legacy version -BWArRNA using bwa to count rRNA reads? That seems to be a more accurate option.
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Hello Biologger - your prior suggestion for Issue 15 was great and solved the problem I was running into. However, now when I run the version of the pipeline you suggested, I get the following error:
…
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Hello,
should toxin activity be added as a parent to
rRNA N-glycosylase activity
?
rRNA N-glycosylase activity has synonyms saporins, ricin, etc
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Good starting review [The roles of assembly factors in mammalian mitoribosome biogenesis ](https://pubmed.ncbi.nlm.nih.gov/34339868/)
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I have cageseq data from human postmortem brains and I want to remove rRNA sequences from that. I am using smr_v4.3_default_db.fasta as a reference from your new database file "https://github.com/sort…
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### Description of the bug
When the `--sortmerna_index` flag is provided (e.g., with a directory of prebuilt rRNA indexes) along with the `--remove_ribo_rna` flag, the pipeline will do the initial t…
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### Description of feature
Hi,
Thanks for providing this wonderful pipeline for using!
After digging some information in sortmerna and this pipeline, I have an curious about defualt SortMeRNA d…
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Hi, I am trying out Ampligone. It works fast but I got a few questions. I am working with Nanopore reads of 16s rRNA amplicons.
1) If you provide the tool with a single reference, than it determine…