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### Checks
- [X] I have checked that this issue has not already been reported.
- [X] I have confirmed this bug exists on the [latest version](https://github.com/prefix-dev/pixi/releases) of pixi, us…
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Dear administrator.
Hello, this error occurred when I was using juicer to process HIC data. How should I solve this problem?
The error is:
[bam_sort_core] merging from 1530 files and 170 in-memor…
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It seems like there is currently no support for possible correction/avoiding double counting of coverage overlap in paired-end read-pairs (samtools depth option -s) and deciding on whether to include …
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### Description of the bug
Hello,
I am having trouble with the sample input file. I have .csv file with correct file names and format as described in the pipeline page (also attached here). I get …
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Hi
Thanks for the tool. It's really nice. One thing I noted is that samtools in your code use old version and mpileup `-t` and `-v` is deprecated in the latest version (v 1.18). I am currently usi…
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Thank you for htslib. We are planning to compress a lot of BAMs (~250K files) to CRAMs. We are concerned about possible file corruption and data loss. Therefore we plan to validate each CRAM has the s…
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Hi Jody, we just tried to install tb-profiler v6.3.0 and there is an error with samtools when running. Can you take a look at this?
Thanks!
Simone
[09:55:28] INFO Mapping to reference gen…
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Dear Adam,
I hope you are doing well. I just got to know about this tool to find telomers in assembled genomes. I Am trying to run this on one of my assembled genomes but the documentation in readm…
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Hi, I have encountered an issue when running my BAM file the error mentioned 'Segmentation fault' after reading the BAM files.
This is my config files:
[config.txt.txt](https://github.com/user-a…
Calhs updated
3 weeks ago
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I did a fresh install of flye with micromamba. Python is 3.9.
I get a core dump on the minimap2 step. Any suggestions?
Thanks!
less /Spawn/Isolates/LT001001/results_flye_correct/10-consensu…