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Dear respected author,
Hello! I am thrilled and deeply inspired after reading your work, as I am currently seeking methods to distinguish diploid and tetraploid cells in plant scRNA-seq data. I w…
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Hi,
i am trying to run Cytospace on spatial transcriptomics on Count matrices encountering the **illegal hardware instruction**.
Iam running cytospace on Macos M3 Max Chip. highly appreciate any…
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This issue is a place to discuss how to create and collaborate on flexible scRNA-Seq workflows.
I've tried to collate the main points of the discussion that started [here](https://github.com/galax…
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### Task motivation
Gene Regulatory Network (GRN) inference is pivotal in systems biology, offering profound insights into the complex mechanisms that govern gene expression and cellular behavior. Th…
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Hello,
Thanks for this resource.
I have a scRNA-seq dataset with close to 10,000 cells from droplet based sequencing (10x chromium).
How does the pipeline handle large number of cells from drop…
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I tried to train a scRNA-seq data set with celltype category intersection between multiple data sets. I would like to ask if there are some data sets with a small amount of data that are recommended?
fscdc updated
3 weeks ago
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Hi @dg520 ,
Hope you are doing well :)
I have been trying to use IRFinder on BAM files generated by cellranger to quantify IR. On doing so, I get the following error :
```
WARN: This sampl…
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Hi Onur,
This is a fascinating study on the deconvolution of bulk RNA-seq in AML. I am a postdoctoral researcher at the Chinese Institutes for Medical Research (CIMR).
Your code serves …
pyebo updated
9 hours ago
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To prepare scRNA-seq data for BAF analysis, xcltk is used. However, xcltk current does not support mm10 mouse scRNA-seq data at the baf_pre_phase.sh step, as it only permits usage of a Sanger-phasing …
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Hello! Thank you so much for developing & maintaining a great tool :)
Could you please help me figure out why I had to replace NaN values for "Seurat_cell_type" to "Unknown" ?
Following the pyci…