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One file per sample is WES T-N.
Multiple samples per file is scRNASeq.
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### Description of the bug
I am trying to programmatically get the list of all containers in the pipeline. However the standard command `nextflow inspect` does not seem to work, even if you tell it t…
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hello Alex,
I want to thank you first for your help.
I'm performing STARsolo on pbmc fastq files and I'm using the reference genome from 10*genomics but I have this issu that I can't understand (the…
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Hi,
thank you for the development of Splatter, it's been very exciting exploring your package so far.
I have been using Splatter to simulate data of one group with varying heterogeneity. To set …
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### Description of feature
Dear all
I just found out that in commit https://github.com/nf-core/scrnaseq/commit/aae5fc5f618d1a4ccd40428d14050d838876f7fe we moved away from having ensembl_gene_ids a…
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Hi, team
I wondering how does this tool work on scRNAseq? Does it require pseudo-bulk? If so, what metadata is recommended to be used as pseudo group? If not, how to interpret sample heterogeneity wit…
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Hi,
Is there a vignette somewhere that demonstrates co-embedding scRNA and scATAC? It'd be very helpful if so!!!
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Hi,
I am adapting your second tutorial to integrate IMC data with scRNAseq.
Do you have any advice for incorporating batch correction, particularly when working with protein data (specifically, …