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COMBINE-lab
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simpleaf
A rust framework to make using alevin-fry even simpler
BSD 3-Clause "New" or "Revised" License
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simpleaf index: runtime expectations
#166
kevinrue
opened
3 days ago
6
run simpleaf with a different umi length (here 9) | add-chemistry successfully
#164
robertzeibich
opened
1 week ago
0
simpleaf index error piscem index failed to build succesfully ExitStatus(unix_wait_status(6))
#163
lichtobergo
opened
2 weeks ago
0
read lengths differ
#162
robertzeibich
closed
1 week ago
8
simpleaf index: long runtime | takes too long
#161
robertzeibich
closed
1 week ago
3
[feature request] umi-edit-dist parameter
#160
TavorB
opened
1 month ago
0
expose piscem workdir parameter `-w` for simpleaf index
#159
DongzeHE
closed
1 month ago
0
[feature request] 10x chemistry autodetection
#158
rob-p
opened
3 months ago
3
sequencing saturation
#157
wangjiawen2013
closed
4 months ago
4
merge dev into main
#156
rob-p
closed
4 months ago
0
mege main back into dev
#155
rob-p
closed
4 months ago
0
merge dev into main
#154
rob-p
closed
4 months ago
0
merge main back into dev.
#153
rob-p
closed
4 months ago
0
Update test_simpleaf.yml
#152
rob-p
closed
4 months ago
0
Dev
#151
rob-p
closed
4 months ago
0
Update test_simpleaf.yml
#150
rob-p
closed
4 months ago
0
Update test_simpleaf.yml
#149
rob-p
closed
4 months ago
0
Update test_simpleaf.yml
#148
rob-p
closed
4 months ago
0
Update test_simpleaf.yml
#147
rob-p
closed
4 months ago
0
Update test_simpleaf.yml
#146
rob-p
closed
4 months ago
0
Update test_simpleaf.yml
#145
rob-p
closed
4 months ago
0
Update test_simpleaf.yml
#144
rob-p
closed
4 months ago
0
Update simpleaf_conda_env.yml
#143
rob-p
closed
4 months ago
0
Update simpleaf_conda_env.yml
#142
rob-p
closed
4 months ago
0
Update test_simpleaf.yml
#141
rob-p
closed
4 months ago
0
chore(main): release 0.17.0
#140
github-actions[bot]
closed
4 months ago
1
Dev
#139
rob-p
closed
4 months ago
0
Merge main back into dev
#138
rob-p
closed
4 months ago
0
Error: invalid base: 0067
#137
holmrenser
opened
5 months ago
6
Retaining sample origin information
#136
pakiessling
closed
6 months ago
2
[question]: maximum available parallelism and number of threads
#135
tamuanand
opened
7 months ago
1
Error: alevin-fry generate-permit-list failed with exit status ExitStatus(unix_wait_status(25856))
#134
lichtobergo
closed
8 months ago
19
Indexing error: piscem index failed to build succesfully ExitStatus(unix_wait_status(132))
#133
lichtobergo
closed
8 months ago
17
0 cells returned
#132
mousepixels
closed
9 months ago
4
10x genomics FFPE chemistry
#131
wangjiawen2013
opened
9 months ago
0
chore(main): release 0.16.2
#130
github-actions[bot]
closed
9 months ago
1
Dev
#129
rob-p
closed
9 months ago
0
permit list download failure
#128
rpolicastro
closed
9 months ago
8
Merge main back into dev
#127
rob-p
closed
9 months ago
0
indexing error: there is no k-mer that belongs to a list of size > 128 and <= 256
#126
rpolicastro
closed
9 months ago
9
chore(main): release 0.16.1
#125
github-actions[bot]
closed
9 months ago
1
fix: update 10xv3 permit list location
#124
rob-p
closed
9 months ago
0
fix: add piscem to conda env
#123
rob-p
closed
9 months ago
0
chore(main): release 0.16.0
#122
github-actions[bot]
closed
9 months ago
1
Dev
#121
rob-p
closed
9 months ago
0
merge main back into dev
#120
rob-p
closed
10 months ago
0
consider making piscem a dependency in the simpleaf conda env
#118
rpolicastro
closed
9 months ago
5
chore(main): release 0.15.1
#117
github-actions[bot]
closed
1 year ago
1
Dev
#116
rob-p
closed
1 year ago
0
Cell-by-isoform matrix
#115
sameer-aryal
opened
1 year ago
2
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