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Is it possible to turn the cpp pointer back into R?
Now `logNormCounts.chan` return a `pointer` contaning the logcounts matrix, which makes it hard to integrate with `Seurat` or `SingleCellExperime…
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### If you are filing this issue based on a specific GitHub Discussion, please link to the relevant Discussion.
https://github.com/AlexsLemonade/OpenScPCA-analysis/discussions/727 & https://github.co…
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I was trying to merge multiple Seurat objects but saw the error:
Error in validObject(object = x) :
invalid class "Assay5" object: Layers must be two-dimensional objects
the codes for…
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Dear CellScopes team,
Hello! I have always admired your team's outstanding publications in kidney research. Recently, I tested CellScopes, and I must say it is truly impressive. I was amazed by its a…
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Two Seurat objects, specifically "Zebrafish_LD_pbmc_seurat.RData" and "Zebrafish_TR_pbmc_seurat.RData," are encountering loading issues with the following error message: "Error in load("ebrafish_LD_pb…
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thanks for developing loupeR, has worked great for all my Seurat objects to help share data to others
however, i have a seurat object where our collaborator removed doublets with 'singleCellTK'; ho…
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When Seurat objects are created through `CreateSinglerSeuratObject()` and I try to merge them (according to: https://satijalab.org/seurat/v3.0/merge_vignette.html) I get the following error:
```
> t…
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I was trying to create a reproducible example of another issue I'm having with JoinLayers() taking an indefinite amount of time (killed manually after ~12 hours).
The dataset I used is from [here](…
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I am trying to merge a list of SCTransformed Seurat objects. However, I am getting the following error:
Error in FetchResidualSCTModel(object = object, assay = assay, umi.assay = umi.assay, :
…
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- [x] Improve description of functions in ?
- [x] Add heat map visualisation
- [x] Add web page for visualisations
- [x] Add function to deal with SingleCellExperiment objects
- [x] Optimize memo…