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I have a question.
In the phenotype table in the gbdmr tutorial, you seem to have DMR and DMP detection for two phenotypes with age and sex, but how can there be one DMR_summarylist for these two ph…
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Thanks for providing this code and shiny app along with your article in Nature Machine Intelligence.
I'm greatly interested in the interplay between causality and machine learning, and personally wor…
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I get this error when my VCF file it contains a lot of samples.
command executed:
` vcf2gwas -v chr20.Haplotypes.vcf.gz -pf height_data_ukbb_participant.csv -p height -cf covariants_nokinship_da…
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hi
I am having difficulties running the tool and get the output. The analysis skips all the variants for a gene and doesn't give out any results. Do you know what is wrong with the input ?
Thank…
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Hello,
I am using 1000 Genomes files downloaded from [here](ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20130502/) to perform single variant tests. Using the chr20 VCF.GZ file and appropriate PE…
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**In this Phenotype page: impaired glucose tolerance**
https://www.mousephenotype.org/data/phenotypes/MP:0005293
**In the phenotype page we see**:
- 65 significant genes
- Total number of sign…
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Hello,
I noticed that when the population stratification is present and is not controlled, the association P-values are inflated only in a few chromosomes. For example, using 1000G data, simulated …
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>If this is a request for a new term, please provide us with the following information.
>1. Preferred term label
**sex ratio distortion**
>3. Textual definition
**deviation from expected …
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# Background
ETL Disease step persists its analysis output according to [this](https://github.com/opentargets/platform-etl-backend/blob/bdcda9e008daed0c835a86e1c08b5c6259006a3a/src/main/resources/ref…