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frankvogt
/
vcf2gwas
Python API for comprehensive GWAS analysis using GEMMA
GNU General Public License v3.0
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run error
#47
Xugh1
opened
1 week ago
0
vcf2gwas breaking
#46
glaudelrio
opened
3 weeks ago
0
Unable to successfully install vcf2gwas in new conda environment - numpy dependency version problems
#45
TobyBaril
opened
1 month ago
2
PLINK requires Sex Info
#44
maxx694
opened
1 month ago
0
Variants analysed fewer than the input VCF's SNPs
#43
KarinaGuo
opened
2 months ago
0
ModuleNotFoundError: No module named 'umap'
#42
biopelayo
opened
2 months ago
0
ChildProcessError
#41
Lattesnow
opened
4 months ago
1
The process stop
#40
nibrasissa
opened
8 months ago
0
Unable to install in new conda environment
#39
jeremysutherland
opened
11 months ago
4
Fix minor type in the argument in README
#38
tayabsoomro
closed
10 months ago
0
kmers_gwas.py cannot find a pheno.phenotypes_and_permutations file
#37
tommydavies
closed
11 months ago
2
Can't view Manhattan and QQ-plots
#36
TinaNeik339
opened
1 year ago
0
can't update to new version v0.8.9
#35
vinod1981
opened
1 year ago
0
number of analyzed SNPs = 0
#34
MooseyGoosey
opened
1 year ago
0
Info: No SNPs could be compared to genes, please check the species or gene file selection
#33
jeremysutherland
opened
1 year ago
0
ValueError: Please make sure to only select phenotypes/covariates featured in the file
#32
jeremysutherland
closed
1 year ago
0
Logistic regression?
#31
Jolleboll
opened
1 year ago
0
Singularity?
#30
Jolleboll
closed
5 months ago
2
Running via docker is not working anymore
#29
adrianodemarino
closed
1 year ago
2
ZeroDivisionError
#28
ijekt
closed
1 year ago
0
Update utils.py
#27
alesha92
closed
1 year ago
1
Check for a vcf index before indexing
#26
kdm9
closed
1 year ago
1
Duplicate ID 's00007:1500001' generated by --set-missing-var-ids.
#25
liwang0307
closed
1 year ago
1
Issues installing vcf2gwas via Singularity/Apptainer
#24
tommydavies
closed
1 year ago
0
Problem installing in fresh conda environment.
#23
dxter-zz
opened
1 year ago
4
alelle frequency filter is not properly
#22
vinod1981
closed
1 year ago
4
Error: missing 1 required positional argument: 'dir_temp'
#21
adrianodemarino
opened
1 year ago
4
Working with genomes with more than 23 chromosomes
#20
tottlefields
closed
1 year ago
4
hello, I have recently been trying to use vcf2gwas, but I have encountered the following issues. Can you please advise me on how to solve them?
#19
zxljiqixuexi
opened
1 year ago
3
gemma version update
#18
vinod1981
closed
1 year ago
1
Multivariate Analysis
#17
M-Ingold
closed
1 year ago
2
Output results folders contain blank spaces
#16
vinod1981
opened
1 year ago
4
Is it possible to run vcf2gwas multiple times simultaneously?
#15
vinod1981
closed
1 year ago
4
ChildProcessError
#14
orangelc1221
closed
1 year ago
4
error
#13
adriludwig
opened
1 year ago
1
Specify covariates file and PCA
#12
llniu
opened
2 years ago
6
Issue installing vcf2gwas in Docker
#11
hangphan
closed
2 years ago
1
plink limitation on invalid --chr-set
#10
drhoads
closed
2 years ago
18
vcf2gwas error after updating to new version
#9
vinod1981
closed
2 years ago
3
conda install vcf2gwas -c conda-forge -c bioconda -c fvogt257
#8
jeppson3
closed
2 years ago
3
NameError: name 'geno_pca_switch' is not defined
#7
vinod1981
closed
2 years ago
1
BSLMM is giving error with same data passed in LMM
#6
vinod1981
closed
2 years ago
4
Analysis fails with chomosome number > 5
#5
matteofigliuzzi
closed
2 years ago
6
`Too many phenotype input files for available ressources` [sic]
#4
hhg7
closed
2 years ago
6
threshold line in the Manhattan plot
#3
vinod1981
closed
3 years ago
3
vcf2gwas failing again and again
#2
vinod1981
closed
3 years ago
9
testing issue
#1
gaushi
closed
3 years ago
0