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Hi @hxj5 , I have a question regarding 10X 5' scRNA-seq data.
For 5' sequencing, the read containing cell barcode and UMI contains part of the transcript https://kb.10xgenomics.com/hc/en-us/article…
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Dear BLAZE developers,
I was wondering if the BLAZE pipeline can be used with a different single-cell protocol than 10X.
If our single-cell protocol has a different Adapter sequence, and we have …
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Hello,
thank you for the great package. I'm curently using monocle 2.32.0 installed from bioconductor. During my analysis, I have observed that the DDRTree dimensional reduction, pseudotime assignm…
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Dear Developers,
Thanks for introducing such a tool to detect multiplets in single-cell epigenomic data.
I’m completely new to using this tool and have some simple questions. I have successfully…
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Hi,
I am working with a very larger sc/sn RNA-Seq dataset. Starting from an h5ad file have used BPcells package to load data in-memory as follows:
`raw
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I encounter occasional CUDA errors during acoustic simulations. I find this error hard to debug, because a comparable simulation in CPU mode appears to run without problems.
```
{Error using .*
…
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Hi,
I am working with a very larger sc/sn RNA-Seq dataset. Starting from an h5ad file have used BPcells package to load data in-memory as follows:
`raw
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### Is your feature related to a problem?
In one of my samples, wf-single-cell fails to correctly find the cutoff in the knee plot and returns an excessive large number of cells. Consequently, when l…
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## Issue
### Description
I have a Ploomber project with multiple pipelines. These pipelines may share some scripts and have some scripts unique to each pipeline.
Running `ploomber nb --inject -…