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Hello!
I'm trying to pull the Docker container from Docker Hub using Singularity (my university HPC doesn't allow the use of Docker). I ran:
singularity build roadies.sif docker://ang037/roadies:l…
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Hi BRAKER developers,
I've been using BRAKER3 with RNA-seq data produced from VARUS, on our university HPC using singularity.
The first step of GeneMark-ET runs fine then I get an error when tra…
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Hi,
I have run your tool as a docker image on my local mac. It runs beautifully. Thanks.
However I need to run it on an HPC as a singularity container (cannot use docker)
I encountered a pyth…
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### Description
(Sorry if this is not the right place for this issue.)
I've recently got access to France's ADASTRA machine AMD-based HPC calculator.
It is not connected to the internet, so to…
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To run on an HPC, I'm wondering if you have a singularity representation of the Docker container
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Hi all,
I'm working on an HPC, and the automatic installation of plugins fails:
```
nf-test test main.nf.test --profile singularity
🚀 nf-test 0.8.4
https://code.askimed.com/nf-test
(c) 202…
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### Description of the bug
JAFFAL pipeline crashes when singularity is used because singularity container has not minimap2 (at least)
### Command used and terminal output
```console
nextflow run nf…
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### Description of the bug
ERROR ~ Error executing process > 'NFCORE_CUTANDRUN:CUTANDRUN:CUSTOM_DUMPSOFTWAREVERSIONS (1)'
Seems to be when creating multiQC file? Perhaps this is due to wanting to …
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Hi, I'm having trouble running the workflow as instructed by the tool.
This is my command line used:
nextflow run /hpcfs/home/ing_quimica/v.rua/mettannotator -profile singularity --input /hpcfs/h…
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Titles:
- Managing bioinformatic software and pipelines
- How to do bioinformatics like a professional bioinformatician
- Reproducible and scalable bioinformatics for researchers
Prerequisite…