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Kaut kur kodā ir jābūt jau kalendāra skatam uzprogrammētam. http://trainingbook.broka.lv/my-trainings/index/type/all/calendar/1
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In November 2018 we I ran some test everything was ok (python2.7). However, when trying to run the tests these days (python3.5) with the same commands we have run into some problems.
Variant tools …
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```
Ready for battle. We are now in GAME_PHASE_BETWEEN_ROUNDS
> ==================
WARNING: ThreadSanitizer: data race (pid=989)
Write of size 4 at 0x7b58000001b0 by thread T6 (mutexes: write M1…
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Dear Zhanxw,
I tried a SKAT analysis using rvtests for a VCF file containing multiallelic variants. It seems like it almost works but fails just at the end in one of its final steps. I have provide…
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@ttimbers : thanks for the wonderful tutorial on running SKAT. 1. Is there a way to run parallel SKAT-O per gene runs on multicore (32 cores with 256GB RAM) computer?
I am planning to run on 1000's o…
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## 1. Bug description
SKAT fails to compile during installation on my system (R version 4.3.0 and gcc version 8.2.0). I tried installing from CRAN as well as directly from GitHub, but both ways the…
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Dear SAIGE developer,
We had run gene based SAIGE test on a small set of case control exome seq sample(137 case vs 681 controls) rare variants(MAF
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We are currently using the Vtools platform to run some SKAT tests in an ongoing project. We have run the SKAT test and would further like to get more information regarding the variants that are includ…
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Hi REGENIE team,
I ran gene-level based test in UKBB DNAnexus platform. I used SKAT and SKATO (`--vc-tests skat,skato`) for the tests. And it turns out that burden tests (lambda GC =1.02) had great…
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When calculating CI's the script enters a loop and never exits (more than an hour). Work around for now I recompiled the package and set computeCI to FALSE in getPolyCI
minimal reproducible examp…