saigegit SAIGE issues - Githubissues

saigegit / SAIGE

Development for SAIGE and SAIGE-GENE(+)

GNU General Public License v3.0

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Container releases

#149 mvforster opened 6 days ago
0
Recommended -minMAC

#148 jjfarrell opened 1 week ago
0
v1.3.3 vs v1.3.6

#147 superpuffin opened 1 month ago
0
Question about including chrX and Y

#146 daxxio opened 1 month ago
0
Discrepancy between reported P value and P value calculated from Z statistic

#145 AhmedEdris opened 2 months ago
0
Add RareEffect functions

#144 namks closed 2 months ago
0
Add a trivial make file

#143 thebigcorporation closed 2 months ago
0
Remove swap file artifact

#142 thebigcorporation closed 2 months ago
0
Step 1 with sparse GRM gets stuck on "use sparse kinship to fit the model"

#141 alix-lacoste opened 3 months ago
0
Question about burden inflation versus skat-o

#140 oalavijeh opened 3 months ago
0
Error: vector::_M_range_check: __n (which is 2538) >= this->size() (which is 2538)

#139 sboer opened 4 months ago
1
Question about `LOCO`

#138 Youpu-Chen opened 5 months ago
0
Error in SPAGMMATtest ... merge bmerge Incompatible join types: x.ID (integer) and i.SNP (character)

#137 alix-lacoste opened 5 months ago
1
Update superlu versioning

#136 jlandman closed 2 months ago
0
Duplicate IDs in phenotype input crash step 2

#135 DDochtermann opened 6 months ago
0
Q: length dosages in DS VCF field

#134 LiterallyUniqueLogin opened 6 months ago
0
Error: vector::_M_range_check: __n (which is 2538) >= this->size() (which is 2538)

#133 i-marques opened 7 months ago
3
Correction help message step1_fitNULLGLMM.R

#132 MCorentin closed 2 months ago
0
SAIGE installation error

#131 Sirtx opened 7 months ago
1
Error running SAIGE using unimputed data

#130 zrayw opened 8 months ago
1
Error during conditional analysis

#129 mohasal12 opened 8 months ago
0
Install problem

#128 chesi opened 8 months ago
0
SAIGE not installing on R 4.3.2

#127 donnybeelo opened 9 months ago
1
Getting this error while running saige on chromosome X

#126 akhilpampana opened 9 months ago
1
Too high value of Varratio_NULL

#125 kkonoo opened 9 months ago
0
memory allocation failure in step1

#124 Lloyd-LiuSiyi opened 9 months ago
4
sweeping docker changes -> default base ubt 24.04

#123 kscott-1 opened 10 months ago
1
SAIGE STEP2 does not accept plink files

#122 alldayscientess closed 10 months ago
1
Installation from the source code Step 3 Issue: leeshawn/MetaSKAT and Rcpp

#121 Lloyd-LiuSiyi closed 9 months ago
1
Discrepancy in number of variants used for set-based test and single association analyses.

#120 JonChan0 closed 10 months ago
0
fitNULLGLMM spsolve(): memory allocation failure

#119 embertucci opened 10 months ago
0
SAIGE step 2 *** caught segfault *** address 0x448, cause 'memory not mapped'

#118 InfoMedichem opened 10 months ago
0
Trying to get LOCO=True to work

#117 Ankeet3 opened 11 months ago
0
Step1, sorting of sample ids

#116 Ankeet3 opened 11 months ago
0
Use of SAIGE-GENE+ GLMM approach for predictive modelling

#115 JonChan0 opened 11 months ago
0
SAIGE step 1 using the whole genome separate chromosome specific to

#114 zrayw opened 11 months ago
3
createSparseGRM script (step0) doesn’t work

#113 omrak opened 11 months ago
1
Parsing errors when covariate names include symbols (gram+, gram-)

#112 evatosco opened 11 months ago
0
error: Error in getopt(spec = spec, opt = args) : long flag "bedFile" is invalid

#111 lucavd closed 11 months ago
10
ERROR: Reading nth marker failed.

#110 rmpb94 closed 11 months ago
2
fitNULLGLMM: glmmkin.ai_PCG_Rcpp_Binary -> Get_Coef -> getCoefficients - spsolve(): memory allocation failure

#109 JonChan0 closed 11 months ago
4
Should I use imputed data for the plink file in step 1 of SAIGE instead of the diierct genotype data of the SNP array?

#108 Apprentice2 opened 1 year ago
0
SNP POS should not use scientific expression

#107 StripelessWatermelon opened 1 year ago
0
Error(s) during WES analysis on UKBB

#106 aLaine1 closed 12 months ago
1
Running step2 in subsets of genomic regions

#105 aokulabasile opened 1 year ago
0
Producing groupFiles from entire chromosome data

#104 Ankeet3 opened 1 year ago
1
samples in geno file do not have phenotypes

#103 nm15336 closed 1 year ago
0
specifying sparseGRM files in step 2 for single variant tests

#102 embertucci closed 3 months ago
0
ERROR! bed file does not exsit

#101 nm15336 closed 1 year ago
2
Docker Updates: ubuntu 20.04->ubuntu 22.04 & speed up docker build

#100 kscott-1 closed 10 months ago
3