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saigegit
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SAIGE
Development for SAIGE and SAIGE-GENE(+)
GNU General Public License v3.0
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Container releases
#149
mvforster
opened
6 days ago
0
Recommended -minMAC
#148
jjfarrell
opened
1 week ago
0
v1.3.3 vs v1.3.6
#147
superpuffin
opened
1 month ago
0
Question about including chrX and Y
#146
daxxio
opened
1 month ago
0
Discrepancy between reported P value and P value calculated from Z statistic
#145
AhmedEdris
opened
2 months ago
0
Add RareEffect functions
#144
namks
closed
2 months ago
0
Add a trivial make file
#143
thebigcorporation
closed
2 months ago
0
Remove swap file artifact
#142
thebigcorporation
closed
2 months ago
0
Step 1 with sparse GRM gets stuck on "use sparse kinship to fit the model"
#141
alix-lacoste
opened
3 months ago
0
Question about burden inflation versus skat-o
#140
oalavijeh
opened
3 months ago
0
Error: vector::_M_range_check: __n (which is 2538) >= this->size() (which is 2538)
#139
sboer
opened
4 months ago
1
Question about `LOCO`
#138
Youpu-Chen
opened
5 months ago
0
Error in SPAGMMATtest ... merge bmerge Incompatible join types: x.ID (integer) and i.SNP (character)
#137
alix-lacoste
opened
5 months ago
1
Update superlu versioning
#136
jlandman
closed
2 months ago
0
Duplicate IDs in phenotype input crash step 2
#135
DDochtermann
opened
6 months ago
0
Q: length dosages in DS VCF field
#134
LiterallyUniqueLogin
opened
6 months ago
0
Error: vector::_M_range_check: __n (which is 2538) >= this->size() (which is 2538)
#133
i-marques
opened
7 months ago
3
Correction help message step1_fitNULLGLMM.R
#132
MCorentin
closed
2 months ago
0
SAIGE installation error
#131
Sirtx
opened
7 months ago
1
Error running SAIGE using unimputed data
#130
zrayw
opened
8 months ago
1
Error during conditional analysis
#129
mohasal12
opened
8 months ago
0
Install problem
#128
chesi
opened
8 months ago
0
SAIGE not installing on R 4.3.2
#127
donnybeelo
opened
9 months ago
1
Getting this error while running saige on chromosome X
#126
akhilpampana
opened
9 months ago
1
Too high value of Varratio_NULL
#125
kkonoo
opened
9 months ago
0
memory allocation failure in step1
#124
Lloyd-LiuSiyi
opened
9 months ago
4
sweeping docker changes -> default base ubt 24.04
#123
kscott-1
opened
10 months ago
1
SAIGE STEP2 does not accept plink files
#122
alldayscientess
closed
10 months ago
1
Installation from the source code Step 3 Issue: leeshawn/MetaSKAT and Rcpp
#121
Lloyd-LiuSiyi
closed
9 months ago
1
Discrepancy in number of variants used for set-based test and single association analyses.
#120
JonChan0
closed
10 months ago
0
fitNULLGLMM spsolve(): memory allocation failure
#119
embertucci
opened
10 months ago
0
SAIGE step 2 *** caught segfault *** address 0x448, cause 'memory not mapped'
#118
InfoMedichem
opened
10 months ago
0
Trying to get LOCO=True to work
#117
Ankeet3
opened
11 months ago
0
Step1, sorting of sample ids
#116
Ankeet3
opened
11 months ago
0
Use of SAIGE-GENE+ GLMM approach for predictive modelling
#115
JonChan0
opened
11 months ago
0
SAIGE step 1 using the whole genome separate chromosome specific to
#114
zrayw
opened
11 months ago
3
createSparseGRM script (step0) doesn’t work
#113
omrak
opened
11 months ago
1
Parsing errors when covariate names include symbols (gram+, gram-)
#112
evatosco
opened
11 months ago
0
error: Error in getopt(spec = spec, opt = args) : long flag "bedFile" is invalid
#111
lucavd
closed
11 months ago
10
ERROR: Reading nth marker failed.
#110
rmpb94
closed
11 months ago
2
fitNULLGLMM: glmmkin.ai_PCG_Rcpp_Binary -> Get_Coef -> getCoefficients - spsolve(): memory allocation failure
#109
JonChan0
closed
11 months ago
4
Should I use imputed data for the plink file in step 1 of SAIGE instead of the diierct genotype data of the SNP array?
#108
Apprentice2
opened
1 year ago
0
SNP POS should not use scientific expression
#107
StripelessWatermelon
opened
1 year ago
0
Error(s) during WES analysis on UKBB
#106
aLaine1
closed
12 months ago
1
Running step2 in subsets of genomic regions
#105
aokulabasile
opened
1 year ago
0
Producing groupFiles from entire chromosome data
#104
Ankeet3
opened
1 year ago
1
samples in geno file do not have phenotypes
#103
nm15336
closed
1 year ago
0
specifying sparseGRM files in step 2 for single variant tests
#102
embertucci
closed
3 months ago
0
ERROR! bed file does not exsit
#101
nm15336
closed
1 year ago
2
Docker Updates: ubuntu 20.04->ubuntu 22.04 & speed up docker build
#100
kscott-1
closed
10 months ago
3
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