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For parts of some experiments, e.g. the presocial periods, SLEAP data is not available.
Thus, currently, animal position data is not available for those presocial periods.
However, the animal posi…
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# Bug description
I have an exported SLEAP training package with a .slp file inside that I have added videos to and labeled additional instances. However, when I try to re-open this file using …
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# Bug description
Cannot detect GPU in the SLEAP environment with the command `python -c "import sleap; sleap.system_summary()"`. I have an error instead.
## Expected behaviour
I would expect th…
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While we currently support JABS format export, JABS itself expects a specific skeleton format:
https://github.com/talmolab/sleap-io/blob/b15e36ed2a658f72c3f36b337655e7a0fc465403/sleap_io/io/jabs.py#L…
talmo updated
2 weeks ago
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NGR will provide resources and pointers on the training labeling phase.
We need to implement SLEAP tracking and logging in the current experiment workflow using a model trained by Ede's lab.
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# Bug description
When I try to train the model this error occurs:
File "C:\Users\spike\.conda\envs\sleap\lib\site-packages\tensorflow\python\util\traceback_utils.py", line 153, in error_handler…
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# Bug description
```
SLEAP: 1.3.4
TensorFlow: 2.7.0
Numpy: 1.19.5
Python: 3.7.12
OS: Linux-5.15.0-122-generic-x86_64-with-debian-bookworm-sid
GPUs: 1/1 available
Device: /physical_device:GPU:0
…
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Currently we use `imageio` and `skimage.io` for video reading. However, `sleap-io` now supports video reading. We should look into swapping out these backends to rely only on `sleap-io` where possible…
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Hi. Our lab is using SLEAP to get pose estimation results. Can OpenLabCluster work with a SLEAP H5 file or slp file?
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The installation instructions describe installing in a python 3.6 environment or installing in the same environment as a SLEAP 1.3.3 install (python 3.7.12) -- the most current version of SLEAP. Howev…