SainsburyWellcomeCentre aeon_mecha issues

SainsburyWellcomeCentre / aeon_mecha

Project Aeon's main library for interfacing with acquired data. Contains modules for raw data file io, data querying, data processing, data qc, database ingestion, and building computational data pipelines.

BSD 3-Clause "New" or "Revised" License

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issues

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fix(Pose): remove config_file from class property

#384 ttngu207 closed 2 days ago
2
fix(Pose): remove `config_file` from class property

#383 ttngu207 closed 2 days ago
0
Add threshold-specific pellet delivery timestamps as dj table

#382 jkbhagatio opened 1 week ago
0
Update SLEAP data ingestion

#381 ttngu207 closed 2 days ago
0
fix(Pose): remove `config_file` from class property

#380 ttngu207 closed 2 days ago
1
add patch_threshold at BlockSubjectAnalysis

#379 ttngu207 closed 2 weeks ago
0
Support social0.3 data, update SLEAP tracking with the new Pose Reader (Bonsai-sleap 3.0), bugfix BlockDetection

#378 ttngu207 closed 3 weeks ago
1
Ensure all aeon submodules included in wheel

#376 glopesdev opened 3 weeks ago
0
Installing from main branch using pip reports missing packages

#375 glopesdev opened 3 weeks ago
0
Update SLEAP data ingestion to work with the new Pose Reader for Bonsai-Sleap0.3

#374 ttngu207 closed 3 weeks ago
0
Minor improvement suggestions

#373 ttngu207 closed 3 weeks ago
0
Updated Pose Reader for Bonsai-Sleap0.3

#372 jkbhagatio closed 3 weeks ago
1
Generalizing the low-level data API for ephys data

#371 glopesdev opened 4 weeks ago
0
fix: bugfix in Block Detection

#370 ttngu207 closed 1 month ago
0
Ingest combined full pose and ID sleap data

#369 anayapouget opened 1 month ago
0
Review `block_ends` in block_analysis.Block

#368 jkbhagatio opened 1 month ago
0
Add reader for CameraLightMonitor stream

#367 jkbhagatio opened 1 month ago
0
feat: update devices schema for social 0.3 ingestion

#366 ttngu207 closed 1 month ago
0
Update pose reader to output string subject names directly, from config file, rather than the int class values

#365 jkbhagatio closed 3 weeks ago
0
Update pose reader to account for new format of Bonsai.Sleap v0.3

#364 jkbhagatio closed 3 weeks ago
1
BlockSubjectPatch analysis, patch preference plot and SciViz update

#363 ttngu207 closed 1 month ago
0
`activepatch` returns df with MultiIndex instead of the expected DatetimeIndex

#362 lochhh opened 1 month ago
0
Improve block analysis - skip subjects with no position data, bugfix Block detection

#361 ttngu207 closed 2 months ago
0
fix first chunk starting before epoch start & disable automatic BlockDetection

#360 ttngu207 closed 3 months ago
0
Block State - pellet time does not belong to any epoch

#359 ttngu207 closed 2 months ago
2
Multiple patch rates and offsets found in one patch for one block

#358 ttngu207 opened 3 months ago
4
Improve automated analysis

#356 ttngu207 closed 3 months ago
1
update(tracking): raise error if no SLEAP data found

#355 ttngu207 closed 3 months ago
0
No SLEAP data found in some chunks

#354 ttngu207 opened 3 months ago
3
feat(block_analysis): retrieve patch offset

#353 ttngu207 closed 3 months ago
0
fix(acquisition): remove debugging codeblock

#352 ttngu207 closed 3 months ago
0
Datajoint pipeline PR into `main` branch

#351 ttngu207 closed 1 month ago
1
fix(tracking): bugfix searching for SLEAP model config file for multi-dir

#350 ttngu207 closed 3 months ago
0
feat(acquisition): refactor Epoch & Metadata ingestion

#349 ttngu207 closed 3 months ago
0
feat(dj): ingest data by searching multiple directories in specified order

#348 ttngu207 closed 3 months ago
0
Update ingestion - using new Stream/Device io

#347 ttngu207 closed 3 months ago
0
Update SciViz local setup

#346 lochhh closed 3 months ago
0
Merge social branch into main post #342 merge

#345 jkbhagatio closed 3 months ago
1
Overhaul linting and formatting

#344 jkbhagatio opened 4 months ago
0
Introduce explicit object model for device streams

#342 glopesdev closed 4 months ago
1
fix: :bug: fix KeyError in BlockDetection

#341 JaerongA closed 4 months ago
3
KeyError instances from

#340 JaerongA opened 4 months ago
5
feat: ✨ add SocialExperiment page in sciviz

#339 JaerongA closed 4 months ago
0
Add BSD-3 license to project

#338 lochhh closed 4 months ago
0
Add Patch Preference calculations to block_analysis

#337 jkbhagatio opened 5 months ago
0
add BlockSubjectPatch analysis & other minor fixes

#336 ttngu207 closed 5 months ago
0
Create a general function to assign events to subjects

#335 jkbhagatio opened 5 months ago
0
Update Aeon environment set-up instructions

#333 anayapouget opened 5 months ago
0
Create a "processed SLEAP data" table in database

#332 jkbhagatio opened 5 months ago
4
update: more robust check for subjects in a given block

#329 ttngu207 closed 5 months ago
0