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SainsburyWellcomeCentre
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aeon_mecha
Project Aeon's main library for interfacing with acquired data. Contains modules for raw data file io, data querying, data processing, data qc, database ingestion, and building computational data pipelines.
BSD 3-Clause "New" or "Revised" License
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Plot in block_analysis assumes there will be 4 patches
#453
jkbhagatio
opened
2 days ago
0
Tiny PR to fix some debugging code
#452
ttngu207
closed
2 days ago
0
Table to compute/store InROI times AND subject-experiment mapping from Pyrat
#451
ttngu207
closed
2 days ago
0
Update block info table text at top of block pages on sciviz
#450
jkbhagatio
closed
2 days ago
1
Make 'in_roi' timestamps queryable by ROI
#449
jkbhagatio
closed
2 days ago
1
SciViz UI/UX Issues
#448
jkbhagatio
opened
1 week ago
0
Add social exp overall plots to sciviz
#447
jkbhagatio
opened
1 week ago
0
Add `ExperimentTimeline`, fix SLEAP `anchor_part` ingestion, fix pyrat API
#446
ttngu207
closed
1 week ago
0
Subject:experiment mapping should be specified in pyrat and added to `Experiment.Subject` table
#445
jkbhagatio
closed
2 days ago
2
Mention sample data in low-level API example notebook
#444
lochhh
closed
2 weeks ago
0
Enhancements and refactoring: Ruff checks resolved
#443
MilagrosMarin
closed
3 days ago
6
Debug problems with composite video generation
#442
anayapouget
opened
4 weeks ago
1
remove skipping ruff checks for dj_pipeline from pyproject.toml
#441
MilagrosMarin
closed
1 day ago
1
Improve top camera ID tracking using SLEAP on the quadrant cameras
#440
anayapouget
opened
1 month ago
4
Split repository
#439
lochhh
opened
1 month ago
1
New `ingestion_schemas` + MANY minor fixes and improvements
#438
ttngu207
closed
2 weeks ago
1
new readers and schemas for reduced data storage in db
#437
jkbhagatio
closed
2 weeks ago
3
Small updates to block plots
#436
jkbhagatio
opened
1 month ago
0
A manual table in the db should contain info for phases within a social experiment, and animals within those phases
#435
jkbhagatio
closed
1 week ago
1
Pose reader assumes all models are trained on the same HPC node
#434
anayapouget
closed
1 month ago
1
Prototype design for ephys management and spike-sorting tasks
#433
ttngu207
opened
1 month ago
0
feat(block_analysis): add table for BlockForagingBout
#432
ttngu207
closed
1 month ago
1
Add behavioral ethogram to block plots
#431
jkbhagatio
opened
1 month ago
0
Info to add to db
#430
jkbhagatio
closed
1 week ago
1
Update 'weighted patch preference' block plot
#429
jkbhagatio
opened
1 month ago
0
Clean up branch for sfn
#428
jkbhagatio
closed
1 month ago
3
Add table for foraging bouts in BlockAnalysis
#427
jkbhagatio
closed
1 week ago
2
Round all wheel values down to nearest 0.1cm in block analysis tables on db
#426
jkbhagatio
closed
1 week ago
2
Rebase block foraging bout detection
#425
lochhh
closed
1 month ago
2
Avoid expensive processing operations when loading dense pose data
#424
glopesdev
opened
1 month ago
1
Incorporate new block plots from `update_block_plots` branch into the pipeline
#423
ttngu207
closed
1 month ago
1
Incorporate new block plots from `update_block_plots` branch into the pipeline
#422
ttngu207
closed
1 month ago
0
Allow reading pose model metadata from local folder
#421
glopesdev
closed
1 month ago
2
Inconsistent finding of identities can crash Pose reader
#420
glopesdev
closed
1 month ago
0
Find nested key breaks if inner value is None
#419
glopesdev
closed
1 month ago
0
Avoid storing pose reader metadata in remote storage
#418
glopesdev
closed
1 month ago
0
add docstrings to all modules and remove skipping ruff d100 and d104 checks from pyproject toml
#417
jkbhagatio
opened
1 month ago
0
Merge 'main' into 'datajoint-pipeline'
#416
MilagrosMarin
closed
1 month ago
0
Database storage concerns
#415
jkbhagatio
closed
1 week ago
1
Ensure CI runs on push to main
#414
glopesdev
closed
2 months ago
2
Activate venv for later steps and remove all conda dependencies
#413
lochhh
closed
2 months ago
1
Add static type checker to CI
#412
glopesdev
closed
2 months ago
0
Consider moving datajoint test config module
#411
glopesdev
closed
2 months ago
0
added working 'get_foraging_bouts' function
#410
jkbhagatio
closed
1 month ago
3
Additional pre-commit and ruff fixes
#409
lochhh
closed
2 months ago
0
Fix block detection, using `due_time`
#408
ttngu207
closed
2 months ago
1
Add support for downsampling encoder data
#407
glopesdev
closed
2 months ago
2
Fix macOS wheel build for `datajoint` (Issue #249)
#406
MilagrosMarin
closed
2 months ago
0
[WIP] Fix wheel build for Datajoint failing on macOS
#405
MilagrosMarin
closed
2 months ago
1
Full pose sleap data for individual sessions
#404
anayapouget
closed
1 month ago
2
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