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Hi!
Really cool package that's easy to use. I've already compared it to some prior selections using geneBasis and think I'd like to switch over. One of the things I'm I'd like to make sure I unders…
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* wf-merfish version: f0444d0
* Python version: 3.10
* Operating System: Linux
* Branch: dataset-via-tensorstore
### Description
I am running the convert_to_qi2lab.py for iterative smFISH dat…
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Hi Sandhya,
I count not find your email contact anywhere so I aplogize to ask my doubt here. You can reply me in ankitbioinfo[@]gmail.com
I am Ankit postdoc in Dominic lab. I am looking on your b…
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Hi guys,
I am trying to generate proper files in order to create a reference atlas from antibody staining of genes/TFs in the drosophila optical lobe.
In the paper I did not found any indication…
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0. produce one large segmentation of smFISH_OLEH and VISIUM
1. check batch_norm in UNET (currently is not there)
2. reflection padding in UNET (currently is not there) or nothing and then prediction…
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Hi,
Thanks for this useful tool! I have done some extensive analysis and found BASiCS to very efficiently remove several types of extrinsic noise, validated by at least three independent datasets.
…
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I saw your paper on bioRxiv. Just wondering, what if you use a hexagonal grid rather than a square grid? How would it affect the SVG results?
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# Design (@brianraymor)
## obs
...
### modality
Key
modality
Annotator
Curator MUST annotate.
Value
categorical wit…
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Hi @tlambert03
I really like the idea of `useq-schema`!
Over the last couple of days I've been working on putting together a basic C++ library that uses a combination of:
- [MMCore](https:/…
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Dear friends, dear future-self,
the seeded H-Watershed implemented [here](https://imagej.net/Interactive_Watershed) would love to get translated to CLIJ. I would drop the user-interface and have th…