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QI2lab
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merfish3d-analysis
3D MERFISH data processing
BSD 3-Clause "New" or "Revised" License
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Issue with new environment installation
#31
mabbasi6
closed
3 weeks ago
2
feat: new qi2labDataStore class to interact with data
#30
dpshepherd
opened
4 weeks ago
0
refactor: change NDTiff reader
#29
dpshepherd
closed
1 month ago
1
refactor: remove generator logic from postprocess
#28
dpshepherd
closed
1 month ago
0
refactor: switch to cudadecon for widefield / OPM deconvolution plus ryomen for chunking
#27
dpshepherd
closed
1 month ago
0
Investigate replacing dask.array map_overlap() calls with ryomen
#26
dpshepherd
opened
1 month ago
2
Investigate ComSeg as alternative to Baysor
#25
dpshepherd
opened
1 month ago
0
feat: tests
#24
dpshepherd
closed
1 month ago
0
Refactor registration class
#23
dpshepherd
opened
1 month ago
0
Refactor data conversion code
#22
dpshepherd
opened
1 month ago
1
Investigate faster, possibly less rigorous, deconvolution
#21
dpshepherd
closed
1 month ago
3
Implement Moffitt iterative normalization reweighting
#20
dpshepherd
closed
1 month ago
1
Investigate replacing DEEDS
#19
dpshepherd
opened
2 months ago
1
Update README to include Baysor installation instructions
#18
dpshepherd
opened
2 months ago
0
Split acquisition and processing
#17
dpshepherd
closed
2 months ago
1
Refactor to use tensorstore for zarr
#16
dpshepherd
opened
2 months ago
0
Remove duplicate spots in tile overlap
#15
dpshepherd
closed
2 months ago
1
Integrate optimization procedures into post processing script
#14
dpshepherd
opened
2 months ago
1
Refactor smFISH processing
#13
dpshepherd
opened
2 months ago
0
Fix standalone GUI
#12
dpshepherd
closed
1 month ago
1
KeyError: 'registered_ufish_data'
#11
julianantolin
closed
2 months ago
1
Refactor to use new NDTIFF package
#10
dpshepherd
closed
2 months ago
1
ValueError: XA and XB must have the same number of columns (i.e. feature dimension.)
#9
julianantolin
closed
2 months ago
3
'registered_decon_data' key error
#8
julianantolin
closed
2 months ago
7
Problem with extra id column in codebook.csv
#7
julianantolin
closed
2 months ago
1
round-by-round rigid registration has misleading field name
#6
mcschweiger
closed
3 months ago
1
Minor indexing bugfix for registration check
#5
mcschweiger
closed
3 months ago
0
Issue with global registration
#4
mabbasi6
closed
3 months ago
18
Issue with post-processing
#3
mabbasi6
closed
5 months ago
20
How to run postprocessing?
#2
mabbasi6
closed
6 months ago
7
Error with "setup_and_run_localization_automated"
#1
mabbasi6
closed
6 months ago
3