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Hi,
thank you for this great tool.
I am running spacemake for an openST data and encountering the following Error when running `spacemake run --cores 8`:
```Error
KeyError in line 286 of /ho…
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I am using singularity to run this pipeline.
Unable to download requested sequence data from Ensembl (ftp://ftp.ensembl.org/pub/release-110/fasta/homo_sapiens/cdna/Homo_sapiens.GRCh38.cdna.all.fa.…
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Since the `Snakemake_model_eval` workflow is central to what `clm` will be used for, it should be picked up by default by `snakemake`. If only training/sampling is needed, then the workflow can be tru…
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### Checklist
- [X] I am using the current [`master`](https://github.com/PyPSA/pypsa-usa/tree/master) branch
- [X] I am running on an up-to-date [`pypsa-usa` environment](https://github.com/PyPSA/…
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On omnibenchmark `dev` commit https://github.com/omnibenchmark/omnibenchmark/commit/e6dab704a08cff5a5addce6106207f49a8c832f3
```
(omnibenchmark) imallona@mlshainan:~/src/omnibenchmark$ git log | h…
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Hi,
Thank you so much for having created such a nice workflow!!
Depending on the species I am running it, I get this error, sometimes for every resolution, sometimes only for one:
```
Job …
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Could you add, perhaps here:
https://github.com/KosinskiLab/AlphaPulldown/blob/e35bf48f96308b02464738a777482ee2226c7032/README.md?plain=1#L269
what to do if a user has:
1. deployed the pipeline wit…
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### Summary
Currently, the Snakemake language grammar, contributed by @SebastianDall (Thank you a thousand times!) in #11858, is not correctly applied to files named "Snakefile".
I have already f…
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Hi.
Using the HiFi_MAG_Pipeline.
Snakemake/conda successfully created four environments (metabat, samtools, python, semibin), but appears to get 'stuck' creating environments/installing checkm2…
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Asking here as I don't know where else:
I would like to use parallel processing with the snakemake wrapper for Bismark.
From the wrapper documentation it did not become clear what I should do. I …