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Dear Benjamin,
I am reposting issue #83.
I have the following set of samples (16S rRNA reads), which were sequenced together on the Illumina (MiSeq 2 x 300 bp) platform:
Soil: extracted/PCR/se…
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To run this, we need a sample dataset. Ideally, it is one that is:
* Public
* Already analyzed (so learners can compare their results)
* Small enough to run quickly during a workshop
* Relevant to…
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### Bug summary
just a list of comments
### Bug details
General questions for study creation:
it looks like we must select an environmental template - what of studies that require more than one sa…
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**New term details**
as described in Symbiont-associated MIxS package manuscript in preparation for submission "The item added to the MIxS core takes into account the nested nature of most associatio…
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U-CIE is a great tool, so simple idea and robust implementation!
I am trying to apply U-CIE to my soil microbiome data (amplicon - 16s rRNA), especially the sample sites. After the UMAP of the com…
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Large impacts of small methane fluxes on carbon isotope values of soil respiration https://www.sciencedirect.com/science/article/abs/pii/S0038071718302013
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Hi,
I am currently trying to implement the metaGEM pipeline for the assembly and metabolic reconstruction of eukaryotic (particularly fungal) genomes. I was wondering if EukRep has been integrated …
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Hi there! I'm trying to use sourcetracker2 for the first time and I have some doubts about how to start.
What I have is a fastq file generated from a metagenomic sequencing.
What I want to do is to …
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Hi @Meghana9854 @roseedwin , I just came across your amazing paper, and I wanted to implement the approach you proposed for my soil shotgun data. Looking upon your methodology, it seem you relied on a…
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### Regen Bounty
### Prize Bounty
$10k in [Regen](https://regen.network) tokens
### Challenge Description
[Regen Network](https://regen.network) is a Cosmos SDK based network that offers a pla…