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I've tried running legion through the terminal and just opening it from the linux "start menu", I don't know what it's actually called, and both times, no matter what I put in, the gui just won't show…
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when i use this command:
**refinem ssu_erroneous -x fasta maxbin3/ taxon_profile_output_dir3/ ~/biosoft/diamond-master/gtdb_r80_ssu_db.2018-01-18.fna ~/biosoft/checkM/RefineM-master/RefineM-master/gt…
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Legion crashes with the messages "MissingData" inside the GUI.
Inside the console it gives my an TypeError
[05:44:29 AM] INFO Creating temporary project at application start... …
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Hi, I was trying to assemble some endolithic green algae chloroplast 16S rRNA from a coral metatranscriptome. I have the database for multiple strains and I prepared the database following the instruc…
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As per https://github.com/serversideup/spin-template-laravel-basic#trusted-ssl-certificates-in-development, this template ships certificates that require [Server Side Up CA](https://serversideup.net/c…
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This would be helpful for studies using primers that include enough SSU to be useful.
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Is there a way to create a completely new database and non-NCBI taxonomy for that database? I am primarily interested in using something like GTDB, which has a genome download and taxonomy tsv file av…
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Hi,
I am running SSU align without any problems:
ssu-align --dna gtdb16Sexport_VS78.txt ssu_aligned_VS78
But then I get this error, when running the command:
ssu-mask --afa ssu_aligned_…
tv195 updated
7 years ago
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ghost updated
9 years ago
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As mentioned in https://github.com/HRGV/phyloFlash/issues/133, `phyloFlash_makedb.pl --remote` fails with the following error:
```
[17:36:19] Checking for required tools.
[17:36:19] Using bowtieb…