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Consider the following schema:
https://unpkg.com/@octokit/webhooks-schemas@7.3.1/schema.json
it contains a definition:
```json
"pull_request$closed": {
"$schema": "http://json-sch…
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When I run syri to identify structural variations in sam files, syri will keep running, but there is no program in the background.
This is my command line:
syri -c Zm_Ki11_mo17.sort.bam -r ./Zm-M…
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Hi,
When I get the clustalw.out.checked.filtered.structure file, how can I do statistics for it? For example, the number of gene with large structural variations.
Thanks a lot!
Regards,
…
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when I use a vcf with structure variation, It's warning skip Indel site, there are total skip Indel sites number is : 618346,after filter Remain SNP Number : 0. Does it mean that VCF files with struc…
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I'd like to include the Long-read assemblies file when identifying structural variations.How do I get Long-read assemblies SVS_VCF files?
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Data
- Adams HD et al. (2017) A multi-species synthesis of physiological mechanisms in drought-induced tree mortality. Nature Ecology & Evolution 1: 1285–1291. DOI: [10.1038/s41559-017-0248-x](http…
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Hi Dr Jiang.
I work with species, genome of which has a high number of genome rearrangements. Because of that I can assembly only diploid version of genome with Flye. And I think, I can resolve the…
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The react menu has a lot of complicated focus management built in, and it gets complicated to allow anything to go in menu header/footer. A recommendation for the react component is currently that if …
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After detecting structural variations (SVs) using the default parameters of CuteSV, I found that the bases of “REF” in some INS (insertion) events in the vcf do not match those in the reference genom…
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Hi,
In the paper [Novel sequences, structural variations and gene presence variations of Asian cultivated rice](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5931083/#__sec9title) authors run novoBr…