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This is a wonderful library of functions for bioinformatic analysis. I'm excited to try it out!
Do you have any plans to implement an alignment algorithm similar to [STAR](https://github.com/alexdo…
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Hi,
I'm just trying to create a index for mapping my RNA reads in mouse (GRCm38), but every time that I tried it says:
Jan 14 15:28:11 ... sorting Suffix Array chunks and saving them to disk...
te…
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Implement Suffix array for strings in any language.
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Alright, I would like to make some changes on how this plugin handles the directory and file lookups.
What I find strange in the current version is the following:
- plugin defaults to an icon fo…
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Benchmark the performance of the suffix array index with different sparseness factors:
- Performance for different input peptide lengths
- Total index size
- [ ] Sparseness 2
- [ ] Sparseness 3
…
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Diesel currently supports the postgres array types. We do not provide built-in support for [various methods](https://www.postgresql.org/docs/current/functions-json.htmll) available for these types. Th…
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A very simple WDL:
```
version development
task sfx {
input {
Array[String] x
String docker = "ubuntu:20.04"
}
command >
output {
Array[String] x_sfx = suffix(".sfx…
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### Component(s)
pkg/ottl
### Is your feature request related to a problem? Please describe.
The `flatten()` function is not able to flatten a map, which has conflicting keys after flattening. In t…
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To reproduce:
```js
var GeneralizedSuffixArray = require('mnemonist/suffix-array').GeneralizedSuffixArray;
let gsa = new GeneralizedSuffixArray(["abcde", "ace"]);
let actual = gsa.longestCommo…