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Hi,
I used SVision-pro to call somatic SVs, but the number of somatic SVs identified is relatively low, only around 500. In comparison, when using pbsv, the number is over 5000. Is it normal?
Be…
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Hi,
We have regions in the reference fasta that are masked and that we ideally would like for sniffles to ignore when scanning for SVs. I could not find anything regarding what Sniffles does or how…
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Hi,
I tried using your tool which runs perfectly, but none of my SVs are lifted.
I'm trying to lift SVs called with NanomonSV tool from nanopore data with T2T reference genome to hg38 to annotate …
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Hi, when I make a prediction on a svs file of size 191231, 86398 with mpp=0.25, the 128G of RAM just explodes. Any solution for this?
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### Description
**Whole slide image are typically scanned at very high resolutions and often include multiple layers to capture detailed information and allow for efficient zooming and panning within…
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Hi i downloaded ovarian cancer tissue svs files from public imaging portal and try to run histoqc
_python3 -m histoqc -c first *.svs_
but i encounter this error
```
2024-06-03 14:46:39,094 - …
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### Describe your bug here.
SVs are FUCKED
when going down they start faster and when going up they start slower its fucking weird
### Command Prompt/Terminal logs (if existing)
_No response_
##…
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Hi, I've been trying to use Vcfdist to compare a SNP + SV callset against truth with both, and it seems to require a prohibitive amount of memory when the SVs are included (it runs relatively quickly …
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Hello there,
i have 400 samples, i have called SVs using manta and Smoove, i now want to merge them using SURVISOR. These the out of SVs variants have the same sample ID the difference is only the …