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您好，我在运行TransDecoder.Predict时出现了一些报错：
TransDecoder.Predict -t MMETSP.unigenes.fa
-T 8
* Running CMD: /usr/lib/transdecoder/util/get_top_longest_fasta_entries.pl MMETSP.unigenes.fa.transdecoder_diSe…
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Step 3: Transcript
PWD: ~/3_geta/3/p/out.tmp/3.transcript
CMD(Skipped): ~/software/geta-geta-2.4.12//bin/split_sam_from_non_aligned_region ../2.hisat2/hisat2.sorted.sam splited_sam_out 10 > splited…
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Hi!
I'm working in the annotation of a red algae which have "transl_table=4" genetic code. Can Transdecoder use this type of genetic code?
I was looking in the manual but I can't find nothing.
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Hi,
I'm trying to use trinotate using data from gene prediction produced by Braker2.0 (augustus).
Thank to your help I managed to go through the first step of Transdecoder (https://github.com/Tra…
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after pulling the dockerized version, I cannot get transdecoder to run.
The command:
`sudo docker run --rm -v`pwd`:`pwd` trinityrnaseq/transdecoder TransDecoder.LongOrfs -t trinity_out_dir.Trin…
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Hi,
Recently, i predicted genes using PASA. I fould some genes that were overlapped.
```R
## gene1
ctg007940 transdecoder gene 152807 155627 . - . ID=GENE.asmbl_10…
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https://trinotate.github.io
- [ ] upgrade signalp wrapper to 4.0 hg clone https://toolshed.g2.bx.psu.edu/repos/peterjc/tmhmm_and_signalp
- [ ] Upgrade transdecoder wrapper to 3.0
https://github.com/…
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Hi,
I installed gff3toolkit by pip install, using python 3.5.
My code is
```
/work/LAS/mash-lab/jing/bin/Anaconda3/envs/mypy3.5/bin/gff3_merge -g1 transdecoder_final.gff3 -g2 Zm_B73.gff3 -f Zm-…
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Hello @brianjohnhaas,
I was trying to annotate a StringTie transcriptome assembly, following this pipeline: gtf_to_alignment_gff3.pl -> TransDecoder.LongOrfs -> TransDecoder.Predict -> cdna_alignme…
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Hi,
I'm trying to run TransDecoder, but no output files are appearing in my current working directory. Here are my inputs:
C:\Users\theca\Desktop\Grad Stuff\Course Materials\Bio 332\Project\Ont…