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As mentioned in https://github.com/scikit-learn/scikit-learn/pull/14140#discussion_r296478787 by @jnothman ,
> `test_truncated_svd.py::test_sparse_formats`
> It's interesting that this is not quite …
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Example: https://www.prairielearn.org/pl/course_instance/128491/instructor/assessment/2310701/downloads/CS_357_Spring2021_Q6_all_files.zip
For question `16-SVD/SVD-LowRank-Image-Denoising`, folders…
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Dear professor,
In my result file for one locus, the posterior probabilities of all SNPs are 1. Why is this? I checked the LD file and there are no NA values. Can you give me some guidance or s…
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#### Describe the bug
Computation of sparse robust pca crashes as it calls svd with unexpected keyword (`full_matrices`)
#### Steps or Code to Reproduce
Mostly copied from tensorly docs
```pytho…
dawe updated
8 months ago
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Hi Guys
I am getting this numpy error
`Computing principal components
0% [######] 100% | ETA: 00:00:00
Total time elapsed: 00:00:01
Traceback (most recent call last):
File "run.py", line 71, i…
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Currently there is one sketching algorithm in `scipy.linalg`, namely the [Clarkson Woodruff transform](https://docs.scipy.org/doc/scipy/reference/generated/scipy.linalg.clarkson_woodruff_transform.htm…
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We will implement SVD, see for example http://stats.stackexchange.com/questions/159325/what-fast-algorithms-exist-for-computing-truncated-svd
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Here is a roadmap to removing `TensorStorage` types (`EmptyStorage`, `Dense`, `Diag`, `BlockSparse`, `DiagBlockSparse`, `Combiner`) in favor of more traditional `AbstractArray` types (`UnallocatedZero…
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Minor bug I assume.
Using fewer than 50 cells raises the following error when trying to run `sc.tl.pca`. The code handles this when the `n_vars < 50` but not when `n_obs` is.
```pytb
ValueError…
Xparx updated
5 years ago
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Hello,
I integrated some data using Harmony back in 2022 (on Seurat V4), but I didn’t save the Seurat object at that time. When I needed to perform further analysis, I reran Harmony on the same dat…