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I am working on untargeted unlabelled dataset. I feel that Max Width and Max S/N Columns (Group Summary...) or Width and S/N Columns (Peak Detailed....) are important while removing noise from the pro…
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Hi! There exists some errors when I run the last part of Untargeted Metabolomics Pre-Processing Chapter in Python3.10 or Python3.11 with PyOpenMS 3.1.0. Could you tell me how to resolve it?
![Uploadi…
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Dear developers,
sometimes, the loading of the MS2LDA web platform is very/extremely slow. This has happened since the first days of the creation of the platform. Is there something on our side tha…
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In the following issue #671 we discussed the major changes for SDRF specification during the next release 1.1. One of them, is the extension of SDRF for metabolomics.
> **GOAL**: The aim of adapti…
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For starters, something like this:
```
{
"accession": "QC:4000257",
"name": "Detected Compounds",
"value": 57
}
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Hi all + @proccaserra , @DSchober ,
I would like to request an extension of the OBI ontology.
Currently, it only includes the term “metabolite profiling” and lacks the term “metabolite fingerpri…
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Dear OpenMS Community,
We are currently testing the FTLKD in metabolomics workflow. While it seems to do an overall good job on the feature linking and on the ressource side, there are problems ari…
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Hi,
I am processing untargeted metabolomics using the vignette. I tried a retention time correction based on peak groups with the following settings. Beside the rather small number of landmark peak…
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Dear @lgatto, @sgibb and @jorainer,
First thanks for creating and maintaining the rformassspectrometry project. I would like to ask how I can submit a new package to the project, is there a guide…
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List relevant bibliography (report DOI + relevant sections) in a new Dendron note (for example projects.commons-public.microcosmics.bibliography)
# Soil metabolomics
## Sample prepraration
…