-
Dear smorabit team,
First, thank you for the incredibly helpful package.
In my single-cell analysis, I am exploring the effect of disease in different regions of the brain and spinal cord (I have …
-
https://peterlangfelder.com
-
Hi,
I am using ComBat-seq to remove batch effects from my dataset, and then running DESeq2 on the same. I was wondering if I could use the same data, after rlog transformation, for WGCNA?
Which …
-
### Prerequisites
Dear YuLab-SMU
I am trying to apply the GO enrichment to the results obtained in WGCNA. I was not able to get the data idirectly into R, so I did the manual list on excel of the…
-
Here is error information
`pak::pkg_install('MagpiePKU/EpiTrace')`
→ Will install 1 package.
→ Will download 1 package with unk…
-
Hello!
I am trying to customize my analysis, which means that I want to provide a different soft threshold to that automatically selected by the findModules function (hence, pickSoftThreshold).
S…
-
- [x] Gene set enrichment with `fgsea`.
- [ ] Phenotype prediction (with `phenopredict`?).
- [x] Differential expression with limma and proper design matrix.
- [x] Differential expression with DESe…
-
this ticket is meant as a place to document ideas, discuss priority and min reqs, etc.
this idea came to us from stuart on slack:
"The logical extension of the Correlation app beyond taxa-taxa correl…
-
http://tiramisutes.github.io/2016/09/14/WGCNA.html
-
Hi,
I wanted to ask about the interpretation and the correlation values from the Correlogram plot.
As I understand, the direction and colour strength is related to the correlation value and the …