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Dear developers,
I am currently working with miRNA-seq reads from Illumina platforms, whose length ranges roughly from 16 to 30 nucleotides.
Do you think bowtie can outperform other popular mapp…
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I tried to align whole genome reads (hg19) generated from pbsim using GraphAligner.
However, the program crashed when building minimizer seeder from the graph.
This is the error message that I got:…
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Hello,
I am trying to run homoplasyFinder (R) on set of whole genome multi-fasta alignment. The file have gaps. I run to the following error. If feedback on the wright way would be helpful.
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Hi,
I ran multiple whole genome alignments using cactus to generate the hal file, and ran the "cactus-hal2maf js_hal2maf evolver27species.hal evolver27species.maf.gz --refGenome xxxx --chunkSize 50…
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- [ ] Move the [WDL](https://dockstore.org/my-workflows/github.com/rlorigro/sv_merge/hapestry_merge_scattered) to appropriate location?
- [ ] Check compatibility with existing pipeline (what are req…
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Dear Authors,
Thank you for making ptACR available. I was reading the article, and wondering if it is appropriate to run it on SNP only alignment rather than on a whole genome alignment.
Thank y…
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Hello all,
Thank you for making this great tool. In the example, the germline caller is used for chromosome 20 only. If we wish to perform germline calling for chromosomes 1-22 for a single sample,…
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Hi,
We have been using SyRI for two-genome comparison in multiple species pairs, and issue #48 has been helpful in fixing problems whenever "Index out of range" error shows up. The chromosomes to re…
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Is reveal capable of generating whole genome alignments for multi-gigabase genomes?
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Adding ska to our phylogenetics inference offerings would provide an alternative reference-free phylogenetics analysis tool in addition to kSNP3. It could also be used for creating whole genome alignm…