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jasperlinthorst
/
reveal
Graph based multi genome aligner
MIT License
45
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3
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reveal rem error
#33
Boer223
opened
4 years ago
2
integrate softmasking into reveal finish
#32
ChriKub
closed
4 years ago
0
Added changes to bubbles, stats, chop and transform
#31
CooKySch
closed
4 years ago
0
Iterative refinement for vg
#30
fbemm
closed
5 years ago
3
reveal gplot - missing edges
#29
fbemm
closed
5 years ago
2
Reference projection in variants
#28
fbemm
closed
5 years ago
3
revel convert --to maf
#27
fbemm
closed
5 years ago
3
reveal realign - muscle fails
#26
ChriKub
opened
5 years ago
1
Setuptools download not working
#25
doudejans
opened
5 years ago
0
Add support to open gzipped fasta files
#24
lrvdijk
closed
4 years ago
1
Output ORI field with `reveal rem`
#23
Olavhaasie
closed
6 years ago
1
Unplaced sequence file stays empty
#22
fbemm
closed
6 years ago
2
Use releases
#21
twrightsman
opened
6 years ago
5
Build fails on MacOS
#20
twrightsman
closed
6 years ago
2
test fails
#19
VidJa
closed
6 years ago
10
Non existent node ids returned from reveal bubbles (hashes)
#18
ChriKub
closed
6 years ago
1
TypeError - utils.py
#17
fbemm
closed
6 years ago
5
applicability to large genomes
#16
ekg
opened
6 years ago
4
Aligning fasta files containing multiple sequences
#15
ChriKub
closed
6 years ago
6
AttributeError: 'module' object has no attribute 'chain_cmd'
#14
fbemm
closed
6 years ago
1
can't read in GFA generated by vg
#13
tdlong
closed
6 years ago
14
reveal bubbles - variant wrongly (not) traversed
#12
ChriKub
closed
7 years ago
4
Extract the alignement to a file ?
#11
ghost
opened
7 years ago
7
Collapsing repetitive regions
#10
ChriKub
closed
6 years ago
4
Difference between the original sequence and the alignment content
#9
LeilyR
closed
7 years ago
2
GFA Paths
#8
fbemm
closed
7 years ago
4
MULITMUMPICKER ERROR <type 'exceptions.UnboundLocalError'>
#7
fbemm
closed
7 years ago
9
Doc improvements
#6
thomasabeel
closed
7 years ago
1
Is there some different between directly align using sequences and indirectly align using graph previous generated?
#5
sailgu
closed
6 years ago
6
Plant genomes ?
#4
colindaven
closed
6 years ago
1
Multifasta input file
#3
leosanbu
closed
8 years ago
2
schemes.py missing
#2
aslett1
closed
8 years ago
2
How can i output vcf format?
#1
sailgu
closed
8 years ago
3