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[comes from https://github.com/poldracklab/smriprep/issues/11]
http://nist.mni.mcgill.ca/?p=858
As per the original discussion, ``MNI152NLin6ASym`` was proposed. However, I can't find such templ…
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Dear ONT staff,
Not sure if this is an appropriate post here, but your kind attention will be much appreciated. If not appropriate, can you please direct me to the correct issue tracker?
We have…
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### What happened?
Workflow was set up in Epi2Me Labs Desktop app Version 4.0.0 on Windows 10.
The Samples were run on a Flongle Flow Cell with Pore Version 9.4.1 (FLO-FLG001).
We selected the co…
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no problem with installation and preflight.
error occured when run 'cgr submit':
sbatch: error: Invalid --mem specification
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Elbow is not installed on Biowulf; pipeline fails without this required package
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Snakemake version in production version of pipeline appears to change unpredictably (6.12 in GCP, 6.15.5 on Biowulf), despite being specified in the lock file as 6.4.1.
Dev version installs 6.4.1 bu…
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Unable to upload dataset using command line interface v4.14.0, despite this dataset passing bids-validator with minor warnings, command-line output attached.
[openneuro_upload_output.txt](https://git…
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Hello,
I am trying to run arcasHLA using the test commands provided on the git page but incur error:
traceback (most recent call last):
File "/arcasHLA/scripts/genotype.py", line 707, in
with …
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I am trying to run sarek on slurm , with the script,
#!/bin/bash
#SBATCH --qos=standard
#SBATCH --job-name=cd_301
#SBATCH --nodes=1
#SBATCH --tasks=2
#SBATCH --cpus-per-task=8
#SBATCH --tasks-p…
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I am new to nanopolish.
I am using it on NIH Biowulf with the following modules:
1) singularity/3.8.5-1 2) guppy/6.1.2 3) seqkit/2.1.0 4) gcc/7.4.0 5) nanopolish/0.13.2 6) samtools/1.1…