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Hi,
I followed the steps in the documentation for initializing a database, create config file and start running atlas. Most jobs passed but rule classify failed. I tried multiple times.
The slurm…
zztin updated
3 years ago
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Hello,
I am trying to analyse a dataset generated using Sureselect XT-HS. I believe this technology generates duplex DNA data (see methods of this paper) but I am failry new working with UMIs and I…
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In the example below, when hovering over a mutation, the chart only highlights the variant in the biopsy samples, not the cfDNA, when splitting by sample class
![image](https://user-images.githubus…
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Hi Markus,
I have run some FFPE samples where I got summary results like below:
![image](https://user-images.githubusercontent.com/92018021/149495188-67f1e2ee-ad56-41f3-9de2-2988e1222811.png)
Done …
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When testing on http://dev-gel.lifebit.ai/ instance, each row for the same filter contains one of the possible values in the `possibleValues` column:
```R
> library(cloudos)
> cloudos_configure(b…
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Hi Markus,
Over the last two days I've been getting a strange error on our cluster:
```
INFO [2021-09-21 20:27:15] MAPD of 11095 allelic fractions: 0.04 (0.03 adjusted).
Error in (function (fmt…
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https://mp.weixin.qq.com/s/3b1_kGNTNBlHwPg9Y7py1g
ixxmu updated
2 years ago
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/hw538/cfDNAPro
Confirm the following by editing e…
hw538 updated
3 years ago
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https://mp.weixin.qq.com/s/F6be3WHpJROToPV-SDpGQg
ixxmu updated
2 years ago
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Hi, I tried PureCN for calling CNV and tumor purity estimation for WES of cfDNA. I have cfDNA from patients with buffycoat control but they use different capture kit version. So I selected ~20 cfDNA f…