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For context, see https://github.com/broadinstitute/2021_09_01_VarChAMP/issues/5#issuecomment-1642753159 and the comments that follow
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**Describe the task**
The decontamination order number, record of decontamination number and the seal number need to be mandatory fields when the toggle is "yes", and an error should come up if these…
ghost updated
9 months ago
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I want to be able to utilize single-end short-read data in addition to paired-end data
Acceptance Criteria:
1. As a user, I should be able to specify single-end short-read data as input to the B…
Ackia updated
7 months ago
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_From [Grim...@gmail.com](https://code.google.com/u/118083579813208703807/) on January 06, 2011 09:59:49_
What steps will reproduce the problem? 1. Open the room builder
2. Look at all the "big" mach…
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Running multiple instances of Hostile on the same FASTQs in the same directory corrupts decontamination statistics since they will write to the same count files. Could fix by putting these inside a `t…
bede updated
9 months ago
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This quest in the Gnome start zone is bugged. http://www.wowhead.com/quest=27635/decontamination
Quest wont work, player cannot mount or use machines. Gnome Mage. Level 5. No buffs - no addons.
Trin…
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```
rule run_decontamination:
input: MG1052/sequence_quality_control/MG1052_filtered_se.fastq.gz, ref/genome/1/summary.txt
output: MG1052/sequence_quality_control/MG1052_clean_se.fastq.gz, …
topfm updated
10 months ago
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Is it alright to run ambient RNA removal programs before running scDblFinder? I use SoupX during the loading of the sample, which adds decimals to the raw data counts. However, even after setting the …
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Samtools considers an empty SAM/BAM file invalid, irritatingly. Workaround is to create empty but valid gzip file e.g.:
```python
with gzip.open('empty.fastq.gz', 'wb') as f:
pass
```
bede updated
10 months ago
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Refactoring around Task and Batch classes could simplify things, and make it practically possible to use temporary directories. Initial GIL paranoia wrt parallelisation led to slightly unwieldy curren…
bede updated
9 months ago