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**Checklist:**
- [X] Check for duplicate issues. Please file separate requests as separate issues on GitHub.
- [X] Describe the feature's goal, motivating use cases, and its expected behavior.
- [n…
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makeDendrogram should somehow order the samples within a cluster, if it doesn't already. I.e. cluster within each cluster and make that the order, even if dendrogram doesn't change.
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Error in hclust(d = dist(x = fegenie.scaled)) :
NA/NaN/Inf in foreign function call (arg 10)
Calls: as.dendrogram -> hclust
Execution halted
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First off, thank you so much for creating this package. I've been needing something like this and wrote a wrapper with rpy2 but will use this instead from now on.
I am noticing some inconsistenci…
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Hello,
I am wondering if the use of k-means in the parameters km, row_km and col_km may be a misnomer? It seems to me that the resulting clusters are simply the result of cutting the dendrograms pr…
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Bokeh already allows heatmaps. Can you add a heatmap layer to rBokeh as well.
For an example of existing interactive heatmap check out the [d3heatmap](http://blog.rstudio.org/2015/06/24/d3heatmap/) R…
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Originally Pivotal Tracker issue: https://www.pivotaltracker.com/story/show/141144049
feature entered by Bradley Broom on 03/06/2017
Allow user to zoom out to next dendrogram level, on rows only, …
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STEP 15: Clustering samples (not defining tumor subclusters)
INFO [2022-10-26 23:06:39] define_signif_tumor_subclusters(p_val=0.1
INFO [2022-10-26 23:06:39] define_signif_tumor_subclusters(), tum…
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See:
https://stackoverflow.com/questions/46404833/clusters-labels-in-dendrogram
https://github.com/drmjc/mjcgraphics/issues/1
https://rdrr.io/github/drmjc/mjcgraphics/man/rect.hclust.labels.html
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and if not, port `cogent.draw.dendogram` to skbio
@ebolyen, would you want to work on this one?
Note there are examples of how to use the scipy version in the [MSA chapter of IAB](http://nbviewer.i…