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1. How consensus footprint is derived? Why do we want target factor peaks to overlap with consensus footprint?
* do we consider consensus footprint as background?
* TF peak regions > footprint >= mo…
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I need to use deeptools to analysis my bulk ATAC-seq data. However, deeptools require a bigwig (.bw) file for most of the analyses.
I have tried two pipelines to generate bigwig file.
Pipeline 1:
…
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Hi,
I am working with compareCluster, trying to do a GSEA analysis using homemade annotation. To do so I decide to use Universal enrichment analysis.
I have a TERM2GENE and TERM2NAME. I am tryin…
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Hi,
I was eager to run this and see what it produces. I do lots of quantitative phosphoproteomics and have always been dissatisfied with the s/w for analysis. I was hopeful that this might do a bun…
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## Summary
This change proposes extending `event.kind` with an additional allowed value, `asset`.
## Motivation
For the Entity Analytics project, we are looking to identify user, host, and ot…
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[this rule](https://github.com/lcdb/lcdb-wf/blob/master/workflows/references/Snakefile#L287) in the references workflow creates mappings (Ensembl -> symbol, etc) from the GTF file. This should be the …
daler updated
4 years ago
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### Description
I am currently using the OpencCTI Hybrid-Analysis Sandbox connector to access your API, and I am concerned that the connector may be exceeding submission quotas without proper regar…
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Hi Florian,
When I was running go-pca.py, I got the following errors:
---------------------------------------------------------------------------------------
Traceback (most recent call last):
…
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Hello,
I'd like to know what are the bed files in the bedlist in CSCAn? The bed files should be loop anchor, or they can be mixture of anchor and non-anchor, i.e. they can be the regions of intere…
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In GitLab by @fbastian on Feb 20, 2016, 22:28
A test of TopAnat on a graph of Conditions, rather than a graph of anatomical structures, has been implemented in branch `test_topanat_conditions_graph`.…