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I ran HMMRATAC on two samples that should be biological replicates. The quality difference between them is high, although the quality is far from ideal for both. However, the low quality sample produc…
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Dear developer,
Thank you for such easy-use and excellent tool!
As you mentioned in your article **_We also provide bed or bigWig files for the list of DMRs. The DMRs can be visualized in a geno…
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Steps to recreate bug:
1. Load a gene set (I used the default gene set.)
2. Add the Mouse mm9 to hg19 blastz genome comparison track
3. Load the find orthologs app. Load the gene set. Click Find or…
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I am using Jbrowse version 1.16.9 to create my Genome Browser.
I have multiple XYplots in which I am using `autoscale:local`. This is an important feature or for me, as I have some extreme values …
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**Describe the bug**
When the user switches from one tab to another (especially a tab that has a lot of components to render) there is a delay in loading that tab.
**To Reproduce**
Click on a tab…
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There needs to be a way to take the blast hit and be able to link out to the region in the genome in the browser where that blast hit occurs. Ideally, the blast hit region should be a track.
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The Websocket settings currently don't allow big enough transfers to move a genome sequence to the browser. However, that might not be the correct response. The issue may more be that we need to pro…
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example: gomodel:YeastPathways_PWY-2301
The imported model name is "myo-inositol biosynthesis - imported from: Saccharomyces Genome Database" but the `` and `` tags remain on the GE browser tab ti…
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Apparently the browser does not work completely when installed on a local Red Hat Server.
I would like to explore the Docker image.
How much space is required for the docker image?
Do I still have …
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Dear Aldy Team,
I analyzed targeted sequencing data of 100 PGx genes aligned to the hg19 reference genome using both BAM and VCF files in Aldy v4.4 (Python 3.9.7 on Linux 3.10.0-1160.95.1.el7.x86_6…