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**Project:**
10x Genomics (http://software.10xgenomics.com/) has developed a technology that produces new type of long-range sequencing data called Linked-Reads. Long (>100Kb) double stranded DNA is s…
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Hello,
I have read the manuscript: An image processing method for metagenomic binning: multi-resolution genomic binary patterns
and I would like to use the software. I have read the installation…
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I would like us to collectively consider and decide on the term we want to use for the concept we currently describe as "Factor". I think there are better terms we could use that align with the commun…
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Hi hardingnj,
Thank you for your exellent work.
But I wonder if I can use the vcf file as input and use the genetic map at the same time. So that I can sliding window based on genetic map to cal…
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When I type "g." in the search page on http://brca-website.cloudapp.net/ it does nothing. (Well actually, a frustrating little "?" pops up next to the search box, but when I go over there to click on …
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One of the handy defaults in Bioconductor GRanges/VRanges objects is a slot for the genome (reference assembly) of each chromosome (should all be the same for any sane object, of course). This helps …
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before we had [OMIM ID](http://edamontology.org/data_1153) and [HGNC ID](http://edamontology.org/data_2298), now you substituted HGNC ID with something broader [Gene ID](http://edamontology.org/data_2…
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Elinor Karlsson and Kerstin Lindblad-Toh are coming out with a big Science paper package at the end of April describing their recent work developing base-pair-resolution constraint by doing comparativ…
gtiao updated
4 months ago
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It looks like a lot of fusions are missed. For example very well known fusions that are always missed by breakfast:
- DUX4-IGH is not found by breakfast in NALM6 cell line (RNA-seq from CCLE).
- …
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I have installed OpenCGA on my computer and followed the instructions in the "Getting Started in 5 minutes" tutorial.
When running the variant annotation step
`./opencga-analysis.sh variant anno…