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Hi Julianne,
After an apparently successful run of jx_indexer.py in index mode, I ran jx_indexer.py in experiment mode which finished with no errors but ended up with an OUTPUT_DIR containing empty t…
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## Bug Report
### iRODS Version, OS and Version
4.3.2, almalinux8, iCommands 4.3.2 and ICAT is MySQL
### What did you try to do?
One of our users tried to synch his local directory that contai…
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We made the decision that the susceptibility terms should be a child fo 'inherited disease susceptibility' and follow the pattern: https://github.com/monarch-initiative/mondo/blob/master/src/patterns/…
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- will map terms from [oba-efo-unreviewed.dosdp.tsv](https://github.com/obophenotype/bio-attribute-ontology/blob/master/src/mappings/oba-efo-unreviewed.dosdp.tsv)
- _growth factor measurement terms_
…
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@cmungall, with a few magical queries:
```
mondo mappings -M UMLS i^MONDO -O csv | cut -f1 > ~/Downloads/mondo-with-umls.txt
mondo labels [ .idfile ~/Downloads/mondo-with-umls.txt .minus .is_obs…
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Hi,
I'm using `MafAnnotator.py` and encountering numerous warnings: `INFO:AnnotatorCore:Cancer type for the sample should be defined for a more accurate result.`
I'm wondering how I can define t…
Teezi updated
8 months ago
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This is a feature request.
It would be great if STAR would support dynamic masking for an already built genome index.
This feature would be useful especially in calling fusions, where the genes …
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Hi everyone,
I'm trying to run the TIMER deconvolution method on a set of lung normal & tumor RNAseq data, using the following line:
`res_timer = deconvolute( tpm , "timer" , indications = rep( "l…
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Data element 'Precancerous Condition Type' permissible values required updating. Several values are to be removed, three values are to be added.
### Proposed change:
Omit 9 existing permissible …
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Hi, I am conducting a competing risk analysis on a large registry database and recently have experienced some troubles using crr() function in tidycmprsk.
Every time I run the crr() function, it work…