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oncokb
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oncokb-annotator
Annotates variants in MAF with OncoKB annotation.
GNU Affero General Public License v3.0
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UnicodeDecodeError: 'utf-8' codec can't decode byte 0xd4 in position 2270: invalid continuation byte
#219
valleyUp
opened
1 month ago
0
Bump urllib3 from 1.26.8 to 1.26.19 in /requirements
#218
dependabot[bot]
opened
2 months ago
0
Bump requests from 2.31.0 to 2.32.0 in /requirements
#216
dependabot[bot]
opened
3 months ago
0
Support Tumor_Sample_Barcode as column name in clinical file
#215
zhx828
closed
6 months ago
0
Add cancer type(OncoTree) validation
#214
zhx828
opened
6 months ago
0
`INFO:AnnotatorCore:Cancer type for the sample should be defined for a more accurate result.`
#213
Teezi
opened
8 months ago
6
Processing VCF files by vcf2maf with OncoKB™ isoforms?
#212
Teezi
closed
8 months ago
2
Logical to filter VCFs to OncoKB gene list before annotation?
#211
SpikyClip
closed
8 months ago
3
Add option to include descriptions & Add additional columns when annotating genomic change
#210
zhx828
closed
9 months ago
0
Using clinical data results in encoding error
#209
kbrar4013
closed
9 months ago
0
Add additional columns when annotating genomic change
#208
zhx828
closed
10 months ago
0
Update pytests
#207
zhx828
closed
10 months ago
0
Add additional columns when annotating genomic change
#206
zhx828
closed
10 months ago
0
Add descriptions into appended column list
#204
zhx828
closed
1 year ago
0
Oncokb gene symbol/behavior with gene aliases
#203
pintoa1-mskcc
closed
8 months ago
5
MAF annotator annotates Likely-oncogenic mutation as Unknown
#202
andreyurch
closed
1 year ago
1
MafAnnotator annotates intronic mutation as a loss of function
#201
andreyurch
closed
1 year ago
1
Bump requests from 2.27.1 to 2.31.0 in /requirements
#200
dependabot[bot]
closed
9 months ago
0
Add descriptions to oncokb-annotator output file
#199
calvinlu3
closed
1 year ago
0
Search specific data version of OncoKB
#198
asmmhossain
opened
1 year ago
4
Support VCF - discussion thread
#197
zhx828
opened
1 year ago
1
Is there an historic of annotaions changes ?
#196
ZWael
closed
5 months ago
2
Different results page on oncokb.org for HGVSp and HGVSp_Short
#195
ibrahimkurt
opened
1 year ago
1
Conflicting annotations between HGVSp, HGVSp_Short, and Genomic_Change
#194
ibrahimkurt
opened
1 year ago
1
Automizing MSI/TMB FDA-approved drug recommendation via API
#193
ibrahimkurt
closed
1 year ago
1
Annotator falsely returns Likely Oncogenic for a splice region variant without HGVSp info
#192
ibrahimkurt
closed
1 year ago
4
Updates to annotator by genomic change
#191
zhx828
closed
1 year ago
0
Support python 3.11
#190
zhx828
closed
1 year ago
0
Skip token validation if the url is specified by user that different from the default
#189
zhx828
closed
1 year ago
0
open() mode 'rU' invalid mode
#188
gruenbergera
closed
1 year ago
1
Skip token validation if -u is specified
#187
zhx828
closed
1 year ago
0
-r parameter ignored?
#186
vaipathak
opened
1 year ago
1
TypeError: __init__() got an unexpected keyword argument 'allowed_methods'
#185
douglas-hoen
opened
2 years ago
1
Support additional SV headers
#184
zhx828
closed
1 year ago
0
Support additional SV headers && Test annotations for INTRAGENIC_DUPLICATION INTRAGENIC_LOSS
#183
zhx828
closed
1 year ago
2
Add a max number of variants per POST for HGVSg
#182
zhx828
opened
2 years ago
1
Support resistance mutation in oncokb-annotator
#180
zhx828
opened
2 years ago
0
Add flake8 github action and fix all flake8 errors
#179
zhx828
closed
2 years ago
2
Flake8 warnings
#178
zhx828
closed
2 years ago
0
Next minor release
#177
zhx828
closed
2 years ago
0
Minor updates on the example script
#176
zhx828
closed
2 years ago
0
Minor update
#175
zhx828
closed
2 years ago
0
Provide more info when required parameter of each annotator is missing
#174
zhx828
closed
2 years ago
0
Add resistance mutations columns and split TX count column by sensitive and resistance
#173
zhx828
closed
2 years ago
0
INFO:MafAnnotator:For help: python MafAnnotator.py -h
#171
huwenhuo
closed
2 years ago
0
Check whether level exists in the input file
#170
zhx828
closed
2 years ago
0
Alteration content
#169
pegasusCN
closed
2 years ago
1
Add ANNOTATED column based on API status
#168
zhx828
closed
2 years ago
0
Annotation tests should cover all level of evidence
#167
zhx828
closed
2 years ago
1
Merge the latest master
#166
zhx828
closed
2 years ago
0
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