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oncokb
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oncokb-annotator
Annotates variants in MAF with OncoKB annotation.
GNU Affero General Public License v3.0
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Update tests based on v3.12
#165
zhx828
closed
2 years ago
0
Update logics on calculating highest tx level
#164
zhx828
closed
2 years ago
0
Validate oncokb token before starting the annotation
#163
zhx828
closed
2 years ago
0
Support individual CNA file format
#162
zhx828
closed
2 years ago
1
Support structural variant annotator
#161
zhx828
closed
2 years ago
1
Consolidate oncokb annotation column headers
#160
zhx828
closed
2 years ago
0
none oncogenic mutation was annotated as oncogenic mutation
#159
summerghw
closed
2 years ago
4
Add retry for annotation endpoints
#158
zhx828
closed
2 years ago
0
Support HGVSC annotation through API
#157
pegasusCN
opened
2 years ago
2
Add annotation columns using clinical annotator
#156
zhx828
closed
2 years ago
1
Support StructuralVariant annotator
#155
zhx828
closed
2 years ago
2
We should calculate the HIGHEST_LEVEL column also using resistance level
#154
zhx828
closed
2 years ago
0
Support retry for API calls
#153
zhx828
closed
2 years ago
0
Count resistance as oncogenic in the ONCOGENIC_MUTATIONS column
#152
zhx828
closed
2 years ago
1
Upgrade release-drafter to 5.15.0
#151
zhx828
closed
2 years ago
0
multiple var depend durgs
#150
summerghw
closed
2 years ago
1
Different results from api when using GET or POST
#149
pegasusCN
closed
2 years ago
2
Having different annotations from different query type on the same mutation
#148
ZWael
closed
2 years ago
1
[Security] Workflow release-management.yml is using vulnerable action toolmantim/release-drafter
#147
Freakston
closed
2 years ago
0
MafAnnotator (and the others too, probably) silently fails when token is expired
#146
fd-oncodna
closed
2 years ago
5
make batches smaller and timeouts longer in Core
#145
sheridancbio
closed
2 years ago
1
Fix citation columns misalignment
#144
zhx828
closed
2 years ago
0
Definition of functional fusion?
#143
pegasusCN
closed
2 years ago
4
Update annotation tests to use the latest data
#142
zhx828
closed
2 years ago
0
Error: Max retries exceeded with url
#141
zhx828
opened
2 years ago
3
Strip column header to avoid unnecessary spaces
#140
zhx828
closed
2 years ago
0
Blank results for annotation
#139
xiw588
closed
2 years ago
4
Added a 2 minute timeout for all the requests
#138
benglasstone
closed
2 years ago
0
Shorten the annotation test dataset
#137
zhx828
closed
2 years ago
0
can get web api version?
#136
jeongmeani
closed
2 years ago
2
Update bash scripts format following ShellCheck
#135
zhx828
closed
3 years ago
0
Split citations column to multiple based on data fields
#134
zhx828
closed
2 years ago
0
Split github action for annotation tests
#133
zhx828
closed
3 years ago
0
Raise exception for incorrect api key
#132
amcpherson
closed
3 years ago
0
Do not include duplicate drug name when cancer type is empty
#131
zhx828
closed
3 years ago
0
Fix variant allele issue when both copies are different & Add genomic change tests
#130
zhx828
closed
3 years ago
0
Fix a typo in MafAnnotator.py
#129
ygindinrevmed
closed
3 years ago
1
Check Class has the property before checking the value
#128
zhx828
closed
3 years ago
0
Annotator issue reported by user
#127
zhx828
closed
3 years ago
0
Error while running FusionAnnotator
#126
snashraf
closed
2 years ago
5
MafAnnotator incorrectly labels genes based on alternate gene symbols
#125
sprokopec
closed
3 years ago
3
MafAnnotator.py gives error "AttributeError: 'ProteinChangeQuery' object has no attribute 'proteinStart'" when input MAF contains non-coding mutations and -q "HGVSp" is specified
#124
bkinnersley
closed
3 years ago
2
support long tsv format for input cnv data
#123
andurill
closed
2 years ago
6
GET Requests Fail
#122
HershGupta404
closed
3 years ago
1
Parallel
#121
HershGupta404
closed
2 years ago
6
added code for parallel
#120
HershGupta404
closed
3 years ago
1
Give more informative warning message
#119
zhx828
closed
2 years ago
0
Fix issue when input file is empty
#118
zhx828
closed
3 years ago
0
Add tests for Dx/Px
#117
zhx828
closed
3 years ago
0
Include diagnostic/prognostic annotation
#116
zhx828
closed
3 years ago
0
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