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Am I correct in understanding that the `loom` CLI tool is officially deprecated, not maintained, and not used anywhere in the pipeline other than serving the viewer? Does that mean I can safely strip …
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NetCDF is a flavor of HDF5 that is used in the geological/astro communities and is implemented in Python with the [xarray](http://xarray.pydata.org/en/stable/) library and in R with the [RNetCDF](http…
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Please replace this text:
What does disconnectedness look like socially and behaviorally, and how does it affect the human brain? How can modern science support the concept of a spiritual and socia…
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Sten, just a quick check: I assume we'll use the same licence as [`loompy`](https://github.com/linnarsson-lab/loompy/blob/master/LICENSE), that is: BSD 2-clause "Simplified" License"? If so I'll just …
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I'm trying to use loompy, but it fails to load. I've installed it using pip3 (`pip3 install loompy`). When I import it, I get the following error.
```python
>>> import loompy
Traceback (most rece…
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My Training file
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Haile WB, Gavegnano C, Tao S, Jiang Y, Schinazi RF, Tyor WR: The Janus kinase inhibitor ruxolitinib reduces HIV replication in human macrophages and ameliorates HIV encephalit…
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All of my gene and cell metadata is stored as pandas dataframes and it's a pain to have to convert those to dictionaries every time for `loompy`. Can `loompy` simply accept Pandas dataframes for these…
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**[ UUID ]** 65cf358c-baed-4d55-b29e-f1faeb7b9dfa
**[ Session Name ]** The Data Neuroscientist
**[ Primary Space ]** Open Innovation
**[ Secondary Space ]** Decentralization
**[ Submitter's Name ]*…
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Trying to create a `loom` dataset here and am getting errors after I convert my `pandas` DataFrame of cell/gene attributes to a dictionary. I suspect that since `pandas` does object arrays instead of …
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pl-ki updated
6 years ago