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Hello,a few days ago I read a paper "MethylC-analyzer: a comprehensive downstream pipeline for the analysis of genome-wide DNA methylation" and I am trying to run the code "python MethylC.py command m…
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Just reporting a warning out of ggplot
![image](https://github.com/ChiLiubio/microeco/assets/68851733/49838870-ba5f-426a-af45-315a864860c1)
That might be because the trans_beta$new is grouped by R…
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- Reproducible environments - conda environments
- Jupyter notebooks - Jupyter Labs too since they are the future
- Physical modeling nympy 2 (integration methods) @dvalters
- Statistical modeling…
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Hi @swolock,
thanks for this tool! It's blazing-fast and looks promising on the 10x PBMC data.
However, when working on a larger dataset of T cells, the histograms don't have the nice bimodal …
grst updated
9 months ago
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## Context: the new `global_random_seed` fixture
#22749 introduces a new `global_random_seed` fixture to make it possible to run the same test with any seed between 0 and 99 included. By default, w…
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I've used plot_density several times but today I ran into this error and couldn't find more details about it. Is it possible related to the recent Seurat update?
> library(Nebulosa)
Loading requir…
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### What are the goals of this new example analysis?
Currently ORA in microarray uses differential expression results and the RNA-seq one (not yet developed #344) will end up using a gene module fr…
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I am trying to use Seurat to analyse a Nanostring CosMx dataset. I followed the seurat tutorial at this link:
https://satijalab.org/seurat/articles/seurat5_spatial_vignette_2#human-lung-nanostring-co…
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- [ ] Distress score prediction
- [ ] Topic modelling
- unsupervised clustering, then manually tag based on keyword frequencies
- or use i-carol tagged categories
- [ ] Sentiment analysis …
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Hello Giotto team,
We try to run "runPAGEEnrich":
F1_normalized_standard_6000 = runPAGEEnrich(gobject = F1_normalized_standard_6000, min_overlap_genes = 0, p_value = TRUE, sign_matrix = PAGE_matri…