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Hi, when running Sarek with multiple variant callers, it seems like the first one is picked and the rest are ignored. I run it indicating Strelka and ASCAT, and ASCAT was just ignored.
```#!/bin/b…
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- Colnames in merged_count_table.txt need to be QBiC code + Aligned.sortedByCoord.out.
- Open issue in RNAseq pipeline so they remove the "Aligned..." part
- Check rnadeseq pipeline code still runs
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This can't be a memory issue as I have 64GB on my machine and only adding 2 x 200 viral genomes
## Description of the bug
odgibuild chokes but running the following completes succesfully:
```bash…
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Hi, I was using the singularity to download and run the command line below:
nextflow run nf-core/chipseq -profile test, singularity
and it throw the error message below, any idea? I also attached …
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I got a error message that I cannot not run the nextflow anymore.
This error is caused by `Cannot invoke method toInteger() on null object`
Can anyone help this issue?
the log is following:
…
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```
[ERROR] COMPILATION ERROR :
[INFO] -------------------------------------------------------------
[ERROR] /home/zxmzn80/IdeaProjects/oncostore-proto-project/target/generated-sources/groovy-stub…
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Hi,
I am getting the following error with **qualimap** while running the pipeline. I tried to run without `NXF_OPTS='-Xms1g -Xmx4g'` also, but same error is coming up:
```
nf-core/rnaseq v1.4.2…
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So the pipeline runs properly, filenames need to be named after the sample QBiC code:
QXXXXNNNNN_whateveryoulike.ext
Otherwise MultiQC report and raw count tables will contain the wrong sample n…
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Currently service URLs must be known to the application developer and hardcoded. We built a service registry with Consul, that provides a service registry for service discovery.
It would be nice to…
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Hi Per!
after seeing this last week, we wanted to run our own version of the app at QBIC - looking fab and seems to work as expected. Additions were super easy in terms of beverages, members etc pp…