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The [iSEE](https://bioconductor.org/packages/iSEE/) Bioconductor package enables interactive exploration of any type of data that can be stored in a [SummarizedExperiment](https://bioconductor.org/pac…
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As part of the RNAcentral pipeline, we run R2DT in a nextflow process that makes use of a singularity container converted from the docker container built in this repo.
We currently set up for execu…
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**Describe the bug**
NM_020451.2:c.827_829dup > NP_065184.2:p.(Val275_Ala276=)
**Expected behavior**
To be confirmed
This is a weird one. Mutalyzer shows 2 alternate descriptions. I have added…
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https://mp.weixin.qq.com/s/GPZLTSYkaUStdgI_8zj9EA
ixxmu updated
1 month ago
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e.g. the query
```SPARQL
SELECT DISTINCT ?item ?itemLabel ?_PubMed_ID
WHERE
{
?item wdt:P31 wd:Q13442814 ;
rdfs:label ?itemLabel .
OPTIONAL { ?item wdt:P698 ?_PubMed_ID. }
FIL…
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I have come across to code to possibly streamline this notebook.
We should look at updating and making this notebook more robust..
https://github.com/RobertsLab/code/blob/master/10-blast-2-slim.i…
sr320 updated
5 years ago
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following is the kmeans_cluster.R
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Hi @nextgenusfs --
Thanks for writing this incredible software! I've been experimenting with funannotate for the past week or so, and have it running on some new electric fish genomes. I've been …
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Evidently `biolink:BiologicalEntity` has been turned into an abstract class. We need to verify this, and if so, make the necessary changes to `curies-to-categories.yaml`. Slated to be addressed in the…
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Hello dear Fabricio,
I am using Bionero for the first time to infer a GRN. My data is from a non-model organism, whose RNA-seq samples I assembled with Trinity and predicted the TFs with iTAK.
I a…