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https://mp.weixin.qq.com/s/zttX7tKl9uVPLtHrXqmRYg
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Hi Kai, I am trying to run Taiji on my bulk ATAC- and RNA-Seq data. The assembly used is hg19.
So my config file looks like:
```
input: "input.tsv"
output_dir: "output/"
assembly: "hg19"
geno…
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Matthew N. Bernstein. [Expectation-maximization: theory and intuition](https://mbernste.github.io/posts/em/).
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Bayne et al 2020 currently cites the bioRxiv, but it shoudl really cite the updated and published paper.
We should also check any other cited preprints to see if they have been published.
https://…
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Hi, I wanted to analyze scATAC data from the 10X Multiome assay following your tutorial. The data was aligned to GRCh38.
However, I am encountering several problems which all seem to arise from a mis…
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https://mp.weixin.qq.com/s/COMXQ1vlW_CjK5mCWSgJ3A
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Given a set of sequences, calculate the number of occurrences of all motifs within a range of length that occur in the input sequences. Return the results as a dictionary.
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Hi,
Thanks for this piece of software which looks very exciting. I have some multi-ome data that I would like to try this on and in preparing the scripts, I was using some publicly available data f…
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The data format for gene sets should also support the export of differential expression results and a user uploading their own distribution for a gene set. If there is a standard format for differenti…
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Hi,
thank you for a very convenient and easy to use tool!
I work with plants where, apart from CpG, CHH and CHG motifs are also common for 5mC modifications.
Would it be possible to have the…