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Taiji-pipeline
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Taiji
All-in-one analysis pipeline
https://taiji-pipeline.github.io/
BSD 3-Clause "New" or "Revised" License
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How to use external network
#47
rejo27
opened
2 months ago
0
Error at ATAC_Make_BigWig step: FT:Control.Workflow.Interpreter.Exec
#46
MiguelJulia
opened
3 months ago
0
Taiji source code installation fails
#45
gabrielascui
opened
5 months ago
1
taiji running problem
#44
yuechaowu
opened
5 months ago
1
Problem running scATAC-seq with taiji
#43
youjingyuan
opened
7 months ago
0
Taiji fails during RNA-seq read of quant data
#42
dmalzl
opened
10 months ago
1
Interpretation of Taiji result for transcriptional repressors
#41
YM-Chuang
opened
1 year ago
0
Does Taiji work with CUTnRUN BroadPeak Data?
#40
AlisaOmel
opened
1 year ago
0
QeneQuant raw reads vs normalized
#39
davidsanin
opened
1 year ago
2
Run Taiji on Cut&Run histone mark data
#38
helenhuangmath
opened
1 year ago
3
31mATAC_Get_TFBS(83dd..) Failed: src/Bio/Data/Bed/Types.hs:(213,9)-(221,34): Non-exhaustive patterns in function go
#37
AlisaOmel
opened
1 year ago
3
no results in output folder
#36
wang-tan
closed
1 year ago
6
Failed: Error in $.replicates.files
#35
wang-tan
closed
1 year ago
2
Score in GeneRanks.tsv
#34
Xieeeee
opened
1 year ago
3
stderr: fixmate: invalid option -- 'm'
#33
extraordinari0217
closed
1 year ago
1
Failed: ./taiji-output//GENOME/GRCH38.gtf: openBinaryFile: resource busy (file is locked)
#32
chrismahony
opened
1 year ago
0
tag v1.3.0
#31
sihart25
opened
1 year ago
0
Error. Failed: Could not find transcript_id
#30
jrose835
closed
1 year ago
4
error while loading shared libraries: libtinfo.so.5
#29
ebprideaux
closed
1 year ago
2
Problem running Sc-ATAC pipeline
#28
BW15061999
closed
1 year ago
2
How the multiple PWM of a TF affect pagerank score
#27
swparkbi
opened
2 years ago
2
Differential expression and accessibility analysis
#26
AntonioAhn
opened
2 years ago
0
How to write config file with technical repetitions?
#25
BW15061999
closed
2 years ago
2
Problem running Taiji
#24
BW15061999
closed
2 years ago
4
basic questions
#23
dimitras
closed
2 years ago
9
Errors running Taiji on RNA-seq and ChIP-seq data
#22
spiderzbh
closed
2 years ago
0
Error in Create_linkage step
#21
sasim7
closed
2 years ago
2
Efficient way to generate new PageRank for slightly altered input file
#20
cong-003
closed
3 years ago
3
Error running Taiji on ATAC, RNA, and H3K27ac data
#19
brhodesford
closed
3 years ago
5
Documentation for scATAC analysis
#18
ravipatel4
closed
2 years ago
4
SwissRegulon Motif File Issue
#17
phoebe460
closed
3 years ago
2
CreateLinkage Issue
#16
phoebe460
closed
3 years ago
2
MakeBigWig Issue
#15
phoebe460
closed
3 years ago
3
RNA_Make_Index and SCATAC_Merged_Make_KNN Errors
#14
phoebe460
closed
3 years ago
2
GeneRanks output files missing?
#13
maeleck
closed
3 years ago
6
Error: samtools sort: couldn't allocate memory for bam_mem
#12
cong-003
closed
3 years ago
2
RNAalign/STAR issue
#11
maeleck
closed
3 years ago
3
Pipeline fails at Compute/Output ranks
#10
clip78
closed
3 years ago
2
Added _rnaseq_tmp_dir
#9
clip78
closed
3 years ago
1
Error: Program exits with errors during configuration
#8
claraina
closed
3 years ago
15
Taiji for Windows
#7
claraina
closed
3 years ago
2
Result confirm
#6
ShikanZ
closed
3 years ago
1
Got different node weight when switched the expression files
#5
avialee
closed
4 years ago
7
Program exits with erros.
#4
ShikanZ
closed
4 years ago
37
input file
#3
Mlad22
closed
4 years ago
21
How to run binary file?
#2
sjm0240111
closed
4 years ago
10
Unable to use parallelism
#1
ravipatel4
closed
4 years ago
2