Taiji-pipeline Taiji issues

Taiji-pipeline / Taiji

All-in-one analysis pipeline

https://taiji-pipeline.github.io/

BSD 3-Clause "New" or "Revised" License

34 stars 9 forks source link

issues

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taiji error

#49 ShuchiSmita28 opened 2 months ago
0
Bump actions/download-artifact from 2 to 4.1.7 in /.github/workflows

#48 dependabot[bot] opened 2 months ago
0
How to use external network

#47 rejo27 opened 7 months ago
0
Error at ATAC_Make_BigWig step: FT:Control.Workflow.Interpreter.Exec

#46 MiguelJulia opened 8 months ago
0
Taiji source code installation fails

#45 gabrielascui opened 9 months ago
1
taiji running problem

#44 yuechaowu opened 10 months ago
1
Problem running scATAC-seq with taiji

#43 youjingyuan opened 1 year ago
0
Taiji fails during RNA-seq read of quant data

#42 dmalzl opened 1 year ago
1
Interpretation of Taiji result for transcriptional repressors

#41 YM-Chuang opened 1 year ago
0
Does Taiji work with CUTnRUN BroadPeak Data?

#40 AlisaOmel opened 1 year ago
0
QeneQuant raw reads vs normalized

#39 davidsanin opened 1 year ago
2
Run Taiji on Cut&Run histone mark data

#38 helenhuangmath opened 1 year ago
3
31mATAC_Get_TFBS(83dd..) Failed: src/Bio/Data/Bed/Types.hs:(213,9)-(221,34): Non-exhaustive patterns in function go

#37 AlisaOmel opened 1 year ago
3
no results in output folder

#36 wang-tan closed 1 year ago
6
Failed: Error in $.replicates.files

#35 wang-tan closed 1 year ago
2
Score in GeneRanks.tsv

#34 Xieeeee opened 1 year ago
3
stderr: fixmate: invalid option -- 'm'

#33 extraordinari0217 closed 2 years ago
1
Failed: ./taiji-output//GENOME/GRCH38.gtf: openBinaryFile: resource busy (file is locked)

#32 chrismahony opened 2 years ago
0
tag v1.3.0

#31 sihart25 opened 2 years ago
0
Error. Failed: Could not find transcript_id

#30 jrose835 closed 2 years ago
4
error while loading shared libraries: libtinfo.so.5

#29 ebprideaux closed 1 year ago
2
Problem running Sc-ATAC pipeline

#28 BW15061999 closed 2 years ago
2
How the multiple PWM of a TF affect pagerank score

#27 swparkbi opened 2 years ago
2
Differential expression and accessibility analysis

#26 AntonioAhn opened 2 years ago
0
How to write config file with technical repetitions?

#25 BW15061999 closed 2 years ago
2
Problem running Taiji

#24 BW15061999 closed 2 years ago
4
basic questions

#23 dimitras closed 2 years ago
9
Errors running Taiji on RNA-seq and ChIP-seq data

#22 spiderzbh closed 2 years ago
0
Error in Create_linkage step

#21 sasim7 closed 3 years ago
2
Efficient way to generate new PageRank for slightly altered input file

#20 cong-003 closed 3 years ago
3
Error running Taiji on ATAC, RNA, and H3K27ac data

#19 brhodesford closed 3 years ago
5
Documentation for scATAC analysis

#18 ravipatel4 closed 2 years ago
4
SwissRegulon Motif File Issue

#17 phoebe460 closed 3 years ago
2
CreateLinkage Issue

#16 phoebe460 closed 3 years ago
2
MakeBigWig Issue

#15 phoebe460 closed 3 years ago
3
RNA_Make_Index and SCATAC_Merged_Make_KNN Errors

#14 phoebe460 closed 3 years ago
2
GeneRanks output files missing?

#13 maeleck closed 3 years ago
6
Error: samtools sort: couldn't allocate memory for bam_mem

#12 cong-003 closed 4 years ago
2
RNAalign/STAR issue

#11 maeleck closed 4 years ago
3
Pipeline fails at Compute/Output ranks

#10 clip78 closed 4 years ago
2
Added _rnaseq_tmp_dir

#9 clip78 closed 4 years ago
1
Error: Program exits with errors during configuration

#8 claraina closed 3 years ago
15
Taiji for Windows

#7 claraina closed 4 years ago
2
Result confirm

#6 ShikanZ closed 4 years ago
1
Got different node weight when switched the expression files

#5 avialee closed 4 years ago
7
Program exits with erros.

#4 ShikanZ closed 4 years ago
37
input file

#3 Mlad22 closed 4 years ago
21
How to run binary file?

#2 sjm0240111 closed 4 years ago
10
Unable to use parallelism

#1 ravipatel4 closed 5 years ago
2