issues
search
epi2me-labs
/
modbam2bed
Other
47
stars
8
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Fix segmentation fault when accessing a non-existent chromosome
#72
hyeshik
closed
2 months ago
0
Methylation bed file output cols - Coming as 18 , description available only for 16 in readme
#71
snehaleela
closed
6 months ago
1
modbam2bed N_filt
#70
Houssem-der
closed
6 months ago
3
6mA Mod calling in bacterial Data
#69
AzlanNI
closed
9 months ago
1
Adding --aggregate flag does not result in aggregate behavior
#68
ddubocan
closed
11 months ago
1
ERROR: --highthreshold must be larger than --lowthreshold
#67
Baix7
closed
1 year ago
1
Dependencies
#66
NickNCL
closed
1 year ago
1
Warning message inquiry
#65
nsgarcia27
closed
1 year ago
1
Diffrent output size for different insert bams?
#64
assafgrw
closed
1 year ago
1
Fix compilation when NOTHREADS=1
#63
robertaboukhalil
closed
1 year ago
2
visualize in IGV
#62
sujunhao
closed
1 year ago
1
Modified-Base calling of pod5 files with Dorado, what's next ?
#61
120985
closed
1 year ago
1
Correct workflow for extracting modified bases from bonito calls
#60
jorisbalc
closed
1 year ago
1
modbampy
#59
keenhl
closed
1 year ago
2
Modbampy Python package
#58
keenhl
closed
1 year ago
1
Removal of setting canonical and mod thresholds
#57
pwh124
closed
1 year ago
1
how is coverage calculated
#56
xiaoyunguo
closed
1 year ago
1
Is there a way to mimic the "edge_filter" behavior of megalodon in modbam2bed?
#55
billytcl
closed
1 year ago
2
version
#54
rl4940
closed
1 year ago
4
`undefined symbol: inflate` for modbampy
#53
PanZiwei
closed
1 year ago
2
Symbol lookup error: undefined symbol: bam_mods_at_qpos
#52
szakallasn3
closed
1 year ago
2
ML tag can’t show the correct skipped sites number in Nanopore sequencing
#51
PanZiwei
closed
1 year ago
1
Unexpected behavior calling `list()` on `ModBam().reads()` generator
#50
thekugelmeister
closed
1 year ago
5
error while loading shared libraries: libhts.so.3
#49
palakela
closed
1 year ago
2
Don't have reference fasta
#48
keenhl
closed
1 year ago
6
No modified base tags for reads with supplementary alignments?
#47
PanZiwei
closed
1 year ago
12
Working with Dorado Basecaller
#46
ethan-mcq
closed
1 year ago
1
`modbampy.ModBam.pileup` idiosyncrasies or inconsistencies
#45
thekugelmeister
closed
1 year ago
4
How to get mapped sites number from modbam file
#44
PanZiwei
closed
1 year ago
1
Question about HG002 data
#43
PanZiwei
closed
1 year ago
1
ModuleNotFoundError: No module named 'libmodbampy'
#42
rowanhowellGE
closed
1 year ago
4
Output Issues
#41
jchan3188
closed
1 year ago
2
Dead link
#40
Shians
closed
1 year ago
1
Using CRAM files is very slow (10x slower) if REF_CACHE is not configured beforehand
#39
Coppini
closed
1 year ago
5
Install modbam2bed via anaconda
#38
ekushele
closed
1 year ago
3
about CpG number in modbam2bed output
#37
kaanokay
closed
1 year ago
2
"make modbam2bed" fails
#36
ekushele
closed
1 year ago
3
`modbam2bed` with or without `--aggregate`?
#35
PanZiwei
closed
1 year ago
1
[E::fai_retrieve] Failed to retrieve block: unexpected end of file
#34
PanZiwei
closed
2 years ago
6
pip install fails on MacOS
#33
marcpaga
closed
2 years ago
3
How to interpret 0-255 methylation score
#32
marcpaga
closed
2 years ago
2
how to deal with many bam files
#31
Aline-Git
closed
2 years ago
2
How to modified the value in pos_mod
#30
JeremyQuo
closed
2 years ago
3
How to covert a bedMthy to modbam?
#29
JeremyQuo
closed
2 years ago
1
CIGAR and query sequence lengths differ for
#28
charliechen912ilovbash
closed
2 years ago
3
what is the difference between acc.bed and .bed file?
#27
AlineMuyle
closed
2 years ago
2
No output
#26
charliechen912ilovbash
closed
2 years ago
2
Supplying -m argument multiple times only seems to output the data from last option provided
#25
mp15
closed
1 year ago
2
unaligned bam
#24
rrazaghi
closed
2 years ago
5
error when installing via conda
#23
Jane-Gibson
closed
2 years ago
2
Next