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Comment below with questions or thoughts about the [reading for this week's workshop](https://github.com/uchicago-computation-workshop/Fall2019/blob/master/10-17_Evans/Evans%E2%80%94Advance_Through_Su…
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Here's some notes that I have for the current implementation of the Molecule class:
1. I'm noticing some methods associated with the Molecule superclass that utilize `self.data` (see below), which…
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[SSX_ispyb.docx](https://github.com/ispyb/py-ispyb/files/8916488/SSX_ispyb.docx) provides a list of the fundamental values that we would need to store for SSX experiments. This list can be used as a s…
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Hello,
I would like to propose a new CTV named CompositionalData. The CTV is about packages dedicated to compositional data analysis.
The relevant github link is
https://github.com/statlink/Com…
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Hi all,
I am facing the below error while running alphafold.
File "/mnt/Alphafold/No_doc/alphafold/run_alphafold.py", line 427, in
app.run(main)
File "/home/skhatri/anaconda3/envs/alphafold…
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Hi, thanks for the great project. I'm attempting to load the latest Unimod XML file into Postgres using pyteomics and have encountered a few errors that I've attempted to solve along the way. I've doc…
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Hi,
I get the following errors when run RoseTTAFold2NA on CPU. I have replaced the "torch.cuda.amp.autocast" with "torch.amp.autocast" in predict.py in order to overcome another "NVTX functions not…
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Hi Fabian,
Would you consider adding an option to the PACETomo script, by which a user can define generating smaller ordered TS stacks? I can see that you already have a reordering function, so perha…
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Hi All,
I'm using HHblits in the context of Porter5 to help predict secondary structure. Porter executes HHblits with the flags -cpu 2 -n 3 -maxfilt 150000 -maxmem 8 -v 2. My system runs Pop!_OS li…
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```sh
C:\Users\cleilson\Documents\documentos\FGF\TCC\cTAKES-4.0\apache-ctakes-4.0.0\bin>set CURRENT_DIR=C:\Users\cleilson\Documents\documentos\FGF\TCC\cTAKES-4.0\apache-ctakes-4.0.0\bin
C:\Us…