kalininalab alphafold_non_docker issues

kalininalab / alphafold_non_docker

AlphaFold2 non-docker setup

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issues

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How to run AlphaFold non docker in NVidia 4090 card?

#77 longbow0 opened 3 days ago
0
FileNotFoundError: [Errno 2] No such file or directory: '/tmp/tmpzszd_m92/output.a3m'

#76 33LIKL opened 2 months ago
0
Error: Falling back to the CUDA driver for PTX compilation; ptxas does not support CC 8.9

#75 shadowdeng1994 opened 2 months ago
0
Looking for more options for subsampling

#74 velocirraptor23 opened 2 months ago
2
Stuck on install step: https://github.com/deepmind/alphafold/archive does not exist

#73 bwllc opened 3 months ago
1
ValueError: Could not find HHsearch database

#72 Lili-irtyd opened 4 months ago
2
HHblits query running time is too long!

#71 JLHU2021 opened 5 months ago
0
Why did I enter Python directly when running this Bash script?

#70 khanhtomiu opened 7 months ago
0
Updated alphafold runner to the last version of alphafold script

#69 sergsb opened 7 months ago
0
Unable to initialize backend 'tpu_driver'

#68 rocketman8080 opened 10 months ago
1
zipfile.BadZipFile: File is not a zip file

#67 SHMinger opened 11 months ago
0
403 errors when trying to install Jax

#66 DanYousefi opened 11 months ago
0
Sequence length problem

#65 forever-happy-h opened 11 months ago
0
Too many command-line arguments.

#64 kbrunnerLXG opened 11 months ago
2
GPU Utilization verification

#63 rocketman8080 opened 1 year ago
1
-p <use_precomputed_msas> flag not working

#62 gerdos closed 1 year ago
1
Update run_relax option to models_to_relax

#60 dxu16 opened 1 year ago
2
Efficient use of multimer mode

#59 mpgriesh closed 1 year ago
2
Absolute path of download script

#58 zimb3l-priv opened 1 year ago
3
AttributeError: module 'jax.errors' has no attribute 'UnexpectedTracerError'

#57 ponomarevsy closed 1 year ago
10
Update to AF2 version 2.3.1

#56 PasqM closed 1 year ago
6
Failed to allocate 50331648 bytes for new constant

#55 Violet969 opened 1 year ago
1
Update to Alphafold 2.3.0?

#54 avilella closed 1 year ago
4
Running AlphaFold-Multimer error

#53 mizzlefeng closed 1 year ago
0
jaxlib==0.1.69+cuda111 still here and generating errors

#52 ocstx closed 1 year ago
2
Minimization failed after 100 attempts.

#51 dahaigui opened 1 year ago
4
Low GPU memory-usage and 0 GPU-Util

#50 xuxiaochen1209 opened 1 year ago
1
Fix jax url

#49 SarahBeecroft closed 1 year ago
1
Could not find HHBlits database

#48 karlaarz closed 11 months ago
5
ValueError: Could not find HHsearch database ./alphafold_data/pdb70/pdb70

#47 pariskang closed 1 year ago
4
Change of jaxlib-cuda wheel source

#46 quailwwk closed 1 year ago
2
Jax Version and pocketfft

#45 BlankSama closed 2 years ago
5
run only 1 of the 5 models for AF v2.2.0 monomer via bash command-line?

#44 avilella closed 2 years ago
3
Error with Amber minimization toggle while running in multimer mode

#43 jcs0902 closed 1 year ago
1
alphafold.data.tools

#42 as7a5 closed 1 year ago
1
Taking a long time for predictions + more output files than expected

#41 kaymccoy closed 1 year ago
3
Taking very long time for protein structure prediction

#40 adi1bioinfo closed 1 year ago
1
Change in Alphafold 2.2.0 parameters

#39 abiadak closed 2 years ago
1
Update README.md

#38 avilella closed 2 years ago
0
RuntimeError: HHSearch failed:

#37 CristianoOliveira1 closed 1 year ago
2
Adjustment of run_alphafold.sh to AF2-2.2.0

#36 hegelab closed 2 years ago
1
Errors encountered when trying to run multimer mode

#35 mingyue80 opened 2 years ago
1
FATAL Flags parsing error

#34 mingyue80 closed 2 years ago
7
CUDA runtime implicit initialization on GPU:0 failed. Status: unrecognized error code

#33 Feng-Zhang closed 2 months ago
1
Error while running Alphafold without docker

#32 skhatri007 closed 2 months ago
3
jax update

#31 nick-youngblut closed 2 years ago
1
why pip instead of conda?

#30 nick-youngblut closed 2 years ago
3
Jax

#29 kdpan closed 2 years ago
5
Permission denied

#28 kdpan closed 2 years ago
3
Wrong variable names in download_database.sh

#27 Moa53 closed 2 years ago
1