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```--------
checking for required files:
--------
while parsing a block mapping
in "examples/yeast.yaml", line 36, column 3
expected , but found ''
in "examples/yeast.yaml", line 37, colum…
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I just assembled some yeast genomes with flye and would like to polish those assemblies with this tool but I don't have a sorted BAM file from that assembly.
how do I make one?
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Hi,
Could you provide us with information about how long and what memory and disk space the assembly for model species such as E coli, yeast, fruit fly and human take?
Cheers,
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In the PXD014525 project, the steps in the following figure are used. A raw file contains a mixed protein of Yeast and HELA. And in different raw files, there are different dilution ratios. How shoul…
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Mam33 is a mitochondrial protein involved in ribosome assembly.
Off-target annotations include:
UniProtKB:O94675 | SPBC776.07 | enables | GO:0003714 transcription corepressor activity | ECO…
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=> Input files: https://cloud.cmb.ugent.be/index.php/s/zdGB3zZ7Fwed9gq?path=%2FModule_4_DIA_Quantification%2FSpectronaut
In the parameter file no clear definition of MS1 and MS2 tolerance:
│ ├…
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### Describe the bug
When brewing Ale Wort in a kettle, the initial brew is listed as "Young, Hopped", which then turns into "Young" when hops are added. This first brew is the only one that can be f…
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TL;DR - there are uniprot KW and EC annotations to this family that contradict the literature.
I'll take yeast RAD26 as an exemplar here, but similar patterns are seen in orthologs.
Uniprot has …
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@jbloom one of the reviewers had the following comment:
_Different methods might exhibit various efficiencies for predicting mutations on different regions of the Spike. Is it possible to analyze t…
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Update codon usage table to take flat-text [yeast_codon_table.tsv](https://github.com/riboviz/riboviz/blob/main/data/yeast_codon_table.tsv) file not the deprecated .Rdata format.
This is in respons…